Browse Element(s) Details


OsAffx.21595.1.S1_x_at

Description gb:NM_191412.1
DB_XREF= gi:34909907
GEN=P0665A11.14
TID=OsAffx.21595.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0665A11.14 (P0665A11.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g072801/11hypothetical protein
LOC_Os05g272001/11hypothetical protein
LOC_Os07g272501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g07250OsAffx.1647.1.S1_at2/119+3555766..3558573retrotransposon protein, putative, unclassified
LOC_Os09g07250OsAffx.20565.1.S1_at2/119+3555766..3558573retrotransposon protein, putative, unclassified
LOC_Os09g07250OsAffx.1412.2.S1_at1/119+3555766..3558573retrotransposon protein, putative, unclassified
LOC_Os09g07260NANA9+3558989..3559863retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g07270NANA9+3560254..3564646retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g07280OsAffx.17589.1.S1_at11/119+3576888..3579495hypothetical protein
LOC_Os09g07280Os.56124.1.S1_at7/119+3576888..3579495hypothetical protein
LOC_Os09g07280OsAffx.21595.1.S1_x_at1/119+3576888..3579495hypothetical protein
LOC_Os09g07290Os.54952.1.S1_at11/119+3580289..3585027GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g07300OsAffx.29744.1.S1_x_at11/119+3585605..3606830auxin transport protein, putative, expressed
LOC_Os09g07300Os.5893.1.S1_at11/119+3585605..3606830auxin transport protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21595.1.S1_x_at--448--5492Chr06:983454..983473 (20 bp)
GATAAACCTAAACAGACCCCTTATG
NONE
OsAffx.21595.1.S1_x_at--789--9811Chr01:32831663..32831687 (25 bp)
TAAACAGACCCCTTATGGTGCCTGC
NONE
OsAffx.21595.1.S1_x_at--431--2491Chr01:32831661..32831685 (25 bp)
AACAGACCCCTTATGGTGCCTGCGG
NONE
OsAffx.21595.1.S1_x_at--1121--62120Chr12:14985160..14985184 (25 bp)
GAGGCCAACAAGAGGGATCTAGCGC
NONE
OsAffx.21595.1.S1_x_at--1049--6412Chr10:10050574..10050593 (20 bp)
GATCTAGCGCCATCTTTGATTACGA
NONE
OsAffx.21595.1.S1_x_at--519--9531Chr01:32831620..32831644 (25 bp)
TCTAGCGCCATCTTTGATTACGATG
NONE
OsAffx.21595.1.S1_x_at--635--4551Chr01:32831616..32831640 (25 bp)
GCGCCATCTTTGATTACGATGGGCT
NONE
OsAffx.21595.1.S1_x_at--607--431Chr01:32831611..32831635 (25 bp)
ATCTTTGATTACGATGGGCTAATAC
NONE
OsAffx.21595.1.S1_x_at--178--151Chr01:32831604..32831628 (25 bp)
ATTACGATGGGCTAATACTCGAGGA
NONE
OsAffx.21595.1.S1_x_at--968--4051Chr01:32831600..32831624 (25 bp)
CGATGGGCTAATACTCGAGGAGGAA
NONE
OsAffx.21595.1.S1_x_at--257--9753Chr11:9888293..9888669 (25 bp)
TAATACTCGAGGAGGAAGATTACCC
NONE
Target Sequence 
GATAAACCTAAACAGACCCCTTATGGTGCCTGCGGAGGCCAACAAGAGGGATCTAGCGCCATCTTTGATTACGATGGGCT
AATACTCGAGGAGGAAGATTACCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21595.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis