Browse Element(s) Details


OsAffx.21596.1.S1_at

Description gb:NM_191410.1
DB_XREF= gi:34909903
GEN=P0665A11.12
TID=OsAffx.21596.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0665A11.12 (P0665A11.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g024901/11Adenosine 3'-phospho 5'-phosphosulfate transporter 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02440NANA5+809476..809823hypothetical protein
LOC_Os05g02450Os.54606.1.S1_at11/115+813789..816137expressed protein
LOC_Os05g02450Os.56980.1.S1_at11/115+813789..816137expressed protein
LOC_Os05g02460OsAffx.26694.1.S1_at11/115+819840..820509hypothetical protein
LOC_Os05g02470OsAffx.14504.1.S1_at10/115+823531..825261hypothetical protein
LOC_Os05g02480Os.6237.1.S1_at11/115+827192..828400expressed protein
LOC_Os05g02490Os.7790.1.S1_at11/115+829801..836087Adenosine 3'-phospho 5'-phosphosulfate transporter 1, putative, expressed
LOC_Os05g02490OsAffx.21596.1.S1_at1/115+829801..836087Adenosine 3'-phospho 5'-phosphosulfate transporter 1, putative, expressed
LOC_Os05g02500OsAffx.14505.1.S1_x_at11/115+836423..840267MAP kinase phosphatase, putative, expressed
LOC_Os05g02500OsAffx.14505.1.S1_at11/115+836423..840267MAP kinase phosphatase, putative, expressed
LOC_Os05g02500Os.16976.1.S1_at11/115+836423..840267MAP kinase phosphatase, putative, expressed
LOC_Os05g02510Os.9285.1.S1_s_at10/115+843032..848821Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os05g02520Os.28047.1.S1_at11/115+851191..854118legumin, putative, expressed
LOC_Os05g02530Os.12706.1.S1_at11/115+854974..858517dehydroascorbate reductase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005354molecular_functiongalactose transporter activity
GO:0015165molecular_functionpyrimidine nucleotide sugar transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21596.1.S1_at--888--3553Chr05:831229..831253 (25 bp)
CATCATCGCGAGAAGTAGCCACTAA
LOC_Os05g02490
OsAffx.21596.1.S1_at--197--5371Chr01:32824409..32824433 (25 bp)
GAAGAAAGTTGGCATCCGCCTCCTT
NONE
OsAffx.21596.1.S1_at--764--9231Chr01:32824429..32824453 (25 bp)
TCCTTCAATTGTAGCCTGCCATATT
NONE
OsAffx.21596.1.S1_at--190--9151Chr01:32824445..32824469 (25 bp)
TGCCATATTACCTTATCGGTCCCAA
NONE
OsAffx.21596.1.S1_at--392--5231Chr01:32824526..32824550 (25 bp)
GAATCTACGAATCAGGCTGCCGGGT
NONE
OsAffx.21596.1.S1_at--613--5751Chr01:32825258..32825278 (21 bp)
GACGAGGCCTTAGCCGGATCGCCGA
NONE
OsAffx.21596.1.S1_at--409--9211Chr01:32825279..32825303 (25 bp)
TCCACGCTCTAATCACGGATCGGTG
NONE
OsAffx.21596.1.S1_at--117--7971Chr01:32825295..32825319 (25 bp)
GGATCGGTGCGCTCGCTTCTGAAAC
NONE
OsAffx.21596.1.S1_at--838--10591Chr01:32825311..32825335 (25 bp)
TTCTGAAACGGCTACCTGACCGAAT
NONE
OsAffx.21596.1.S1_at--680--8891Chr01:32825327..32825351 (25 bp)
TGACCGAATAATGACAGGCCCCGCT
NONE
OsAffx.21596.1.S1_at--386--7031Chr01:32825363..32825387 (25 bp)
GTACAGTACAGCATGGAGTCAGTCA
NONE
Target Sequence 
CATCATCGCGAGAAGTAGCCACTAAAATGATGAGAAGAAAGTTGGCATCCGCCTCCTTCAATTGTAGCCTGCCATATTAC
CTTATCGGTCCCAAAATAGATCCCTCCACCACCATCCACAACGAACAGCTAGAGGGTCATAGGAACGAAAGAATCTACGA
ATCAGGCTGCCGGGTTGTGGCGACGAGTGTACTCTTCACCTCGAAACCCCAGAACACCTTTAGCGATCTGGGAAGCAAGA
TGAAGAACCACAAAGAGAAGCGTTTGGGGAGACGAGGCTTGCCGTCGACGAGTCTTGGTGGAACCACGCGACGAGGCCTT
AGCCGGATCGCCGATCCACGCTCTAATCACGGATCGGTGCGCTCGCTTCTGAAACGGCTACCTGACCGAATAATGACAGG
CCCCGCTGTACCATACAAGTACAGTACAGCATGGAGTCAGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21596.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis