Browse Element(s) Details


OsAffx.21746.1.S1_at

Description gb:NM_190565.1
DB_XREF= gi:34908213
GEN=P0406G08.22
TID=OsAffx.21746.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0406G08.22 (P0406G08.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6256011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62520Os.54691.1.S1_x_at2/111+36534712..36537496Zinc knuckle family protein
LOC_Os01g62530OsAffx.11698.1.S1_at11/111+36539139..36540074hypothetical protein
LOC_Os01g62540OsAffx.15567.2.S1_s_at11/111+36541182..36543364hypothetical protein
LOC_Os01g62540OsAffx.15567.2.S1_at10/111+36541182..36543364hypothetical protein
LOC_Os01g62540OsAffx.20192.1.S1_at3/111+36541182..36543364hypothetical protein
LOC_Os01g62540OsAffx.14237.1.S1_at3/111+36541182..36543364hypothetical protein
LOC_Os01g62550OsAffx.2391.1.S1_at7/111+36543644..36545167hypothetical protein
LOC_Os01g62560OsAffx.21746.1.S1_at11/111+36546114..36547259expressed protein
LOC_Os01g62570NANA1+36549197..36555431GTP-binding protein, putative
LOC_Os01g62584OsAffx.28855.2.S1_at11/111+36557331..36560405expressed protein
LOC_Os01g62584OsAffx.28855.3.S1_x_at3/111+36557331..36560405expressed protein
LOC_Os01g62600OsAffx.21744.2.S1_x_at11/111+36563691..36565915laccase, putative
LOC_Os01g62600Os.46813.2.S1_x_at1/111+36563691..36565915laccase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21746.1.S1_at--11--511Chr01:36546487..36546511 (25 bp)
ATCGTAGTGGCGTTGTGACCTTCTT
LOC_Os01g62560
OsAffx.21746.1.S1_at--223--7151Chr01:36546458..36546482 (25 bp)
GTCTTCTCTATGCTTGTGGCTACGG
LOC_Os01g62560
OsAffx.21746.1.S1_at--319--9931Chr01:36546438..36546462 (25 bp)
TACGGCCATGGCTCTGCTAGTGAAG
LOC_Os01g62560
OsAffx.21746.1.S1_at--108--10071Chr01:36546421..36546445 (25 bp)
TAGTGAAGGTGCCTCCTCGTGATCT
LOC_Os01g62560
OsAffx.21746.1.S1_at--400--371Chr01:36546383..36546407 (25 bp)
ATCAATCTCTCGGTTCTGGAAGGCA
LOC_Os01g62560
OsAffx.21746.1.S1_at--74--1971Chr01:36546349..36546373 (25 bp)
ACTGCTGGGCGGTTTTCGTTGCAAA
LOC_Os01g62560
OsAffx.21746.1.S1_at--166--2331Chr01:36546327..36546351 (25 bp)
AAAGTTTGCGCTGTTCGAAGCCCTC
LOC_Os01g62560
OsAffx.21746.1.S1_at--99--7111Chr01:36546302..36546326 (25 bp)
GTCACGGTCGATCAGCTTGGCTACA
LOC_Os01g62560
OsAffx.21746.1.S1_at--35--6291Chr01:36546276..36546300 (25 bp)
GATGTTCTACATTGGCGCGTATCTG
LOC_Os01g62560
OsAffx.21746.1.S1_at--229--6911Chr01:36546258..36546282 (25 bp)
GTATCTGTTGGTGAGCTTCCTTGTA
LOC_Os01g62560
OsAffx.21746.1.S1_at--914--591Chr01:36546234..36546258 (25 bp)
ATGCCTCATGAGCTATCTTGTTTTG
LOC_Os01g62560
Target Sequence 
ATCGTAGTGGCGTTGTGACCTTCTTCGCCGTCTTCTCTATGCTTGTGGCTACGGCCATGGCTCTGCTAGTGAAGGTGCCT
CCTCGTGATCTGTCCCTGCTCGTGATCAATCTCTCGGTTCTGGAAGGCACAGCCATCTACTGCTGGGCGGTTTTCGTTGC
AAAGTTTGCGCTGTTCGAAGCCCTCGTCACGGTCGATCAGCTTGGCTACATGATGTTCTACATTGGCGCGTATCTGTTGG
TGAGCTTCCTTGTATGCCTCATGAGCTATCTTGTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21746.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis