Browse Element(s) Details


OsAffx.21754.1.S1_x_at

Description gb:NM_190542.1
DB_XREF= gi:34908167
GEN=P0408C03.27
TID=OsAffx.21754.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0408C03.27 (P0408C03.27), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g210502/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g234602/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g063502/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g584502/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g030302/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g139102/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os09g215402/11hypothetical protein
LOC_Os01g339702/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g318402/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g394202/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g134402/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g083502/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g237002/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g080002/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g040202/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g170201/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g206401/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g140601/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g398001/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g192501/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g195401/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g186001/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g206201/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g333401/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g291701/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g257901/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g121801/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g362901/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g053201/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g069101/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g100901/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g274201/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g210201/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21030Os.7235.1.S1_at11/113+11916271..11918306GRAB2 protein, putative, expressed
LOC_Os03g21030Os.51926.1.S1_x_at1/113+11916271..11918306GRAB2 protein, putative, expressed
LOC_Os03g21040Os.12186.2.S1_x_at11/113+11936096..11938398expressed protein
LOC_Os03g21040Os.12186.2.S1_at11/113+11936096..11938398expressed protein
LOC_Os03g21040Os.12186.1.S1_at10/113+11936096..11938398expressed protein
LOC_Os03g21050Os.50244.1.S1_x_at10/113+11941346..11947616retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g21050OsAffx.21754.1.S1_x_at2/113+11941346..11947616retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g21060Os.17286.1.S1_at11/113+11952807..11955207NAC domain transcription factor, putative, expressed
LOC_Os03g21070OsAffx.12963.1.S1_at11/113+11966381..11967148hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21754.1.S1_x_at--723--1851Chr01:36442498..36442522 (25 bp)
ACGACATTGCAGGTGCAGGCTGTGC
NONE
OsAffx.21754.1.S1_x_at--794--5671Chr01:36442496..36442520 (25 bp)
GACATTGCAGGTGCAGGCTGTGCTA
NONE
OsAffx.21754.1.S1_x_at--566--5011NONE
GCAGGCTGTGCTAAAAGAGATGCAA
NONE
OsAffx.21754.1.S1_x_at--332--3491NONE
CAGGCTGTGCTAAAAGAGATGCAAT
NONE
OsAffx.21754.1.S1_x_at--455--2331Chr01:36440298..36440318 (21 bp)
AAAGAGATGCAATGGAGTCGGATAA
NONE
OsAffx.21754.1.S1_x_at--42--6331Chr01:36440293..36440317 (25 bp)
GATGCAATGGAGTCGGATAAGTTAC
NONE
OsAffx.21754.1.S1_x_at--777--1045180Chr12:850174..850406 (25 bp)
TTACGCGCGACTTATGCCTTCGACG
NONE
OsAffx.21754.1.S1_x_at--337--18392Chr12:18161743..18161977 (25 bp)
ACGCGCGACTTATGCCTTCGACGTC
NONE
OsAffx.21754.1.S1_x_at--736--5411Chr01:36440211..36440235 (25 bp)
GAAGCGCTTCGCGTAGTGGAGTCCG
NONE
OsAffx.21754.1.S1_x_at--189--4111Chr01:36440207..36440231 (25 bp)
CGCTTCGCGTAGTGGAGTCCGGATA
NONE
OsAffx.21754.1.S1_x_at--744--4911Chr01:36440206..36440230 (25 bp)
GCTTCGCGTAGTGGAGTCCGGATAA
NONE
Target Sequence 
ACGACATTGCAGGTGCAGGCTGTGCTAAAAGAGATGCAATGGAGTCGGATAAGTTACGCGCGACTTATGCCTTCGACGTC
CTGCACCGGGAGAAGGCGACAATAAGGTTTTTGGGAAGCGCTTCGCGTAGTGGAGTCCGGATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21754.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis