Browse Element(s) Details


OsAffx.21763.2.S1_s_at

Description tigr:9629.m06120
TID=OsAffx.21763.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6205011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61990Os.16933.1.S1_at10/111+36211621..36215258ankyrin repeat family protein, putative, expressed
LOC_Os01g62000OsAffx.11689.1.S1_s_at11/111+36216652..36218214Pectate lyase family protein
LOC_Os01g62010Os.36919.2.S1_s_at11/111+36220130..36222021Monoglyceride lipase, putative, expressed
LOC_Os01g62010Os.36919.1.S1_at11/111+36220130..36222021Monoglyceride lipase, putative, expressed
LOC_Os01g62010Os.36919.1.S1_x_at11/111+36220130..36222021Monoglyceride lipase, putative, expressed
LOC_Os01g62020Os.9835.2.S1_at11/111+36223875..36227429UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g62020Os.9835.1.S1_a_at11/111+36223875..36227429UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g62020OsAffx.11691.1.S1_at11/111+36223875..36227429UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g62030OsAffx.9560.1.S1_at11/111+36227584..36228075disease resistance-responsive family protein, putative
LOC_Os01g62040Os.38033.3.S1_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62040Os.38033.3.S1_x_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62040Os.38033.1.S1_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62040Os.38033.2.S1_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62050OsAffx.21763.2.S1_s_at11/111+36235334..36235956hypothetical protein
LOC_Os01g62050OsAffx.21763.2.S1_at10/111+36235334..36235956hypothetical protein
LOC_Os01g62050OsAffx.21763.1.S1_at2/111+36235334..36235956hypothetical protein
LOC_Os01g62060Os.30998.1.S1_at11/111+36238933..36240170uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os01g62070Os.10121.1.S1_at11/111+36243599..36248818cation efflux family protein, expressed
LOC_Os01g62070Os.42490.1.S1_x_at10/111+36243599..36248818cation efflux family protein, expressed
LOC_Os01g62070Os.42490.1.S1_at10/111+36243599..36248818cation efflux family protein, expressed
LOC_Os01g62080Os.54716.1.S1_x_at11/111+36250715..36256828Protein kinase AFC1, putative, expressed
LOC_Os01g62080OsAffx.2386.1.S1_at11/111+36250715..36256828Protein kinase AFC1, putative, expressed
LOC_Os01g62080Os.20399.1.S1_s_at10/111+36250715..36256828Protein kinase AFC1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21763.2.S1_s_at--1072--2971Chr01:36235899..36235923 (25 bp)
AATGTGGATCACAGGTTCTCGATGG
LOC_Os01g62050
OsAffx.21763.2.S1_s_at--557--6451Chr01:36235893..36235917 (25 bp)
GATCACAGGTTCTCGATGGATTCAC
LOC_Os01g62050
OsAffx.21763.2.S1_s_at--868--7891Chr01:36235886..36235910 (25 bp)
GGTTCTCGATGGATTCACCAGCTAA
LOC_Os01g62050
OsAffx.21763.2.S1_s_at--438--8571Chr01:36235877..36235901 (25 bp)
TGGATTCACCAGCTAAGACGCGCGC
LOC_Os01g62050
OsAffx.21763.2.S1_s_at--462--9791Chr01:36235864..36235888 (25 bp)
TAAGACGCGCGCCTCGCGGTCTCGA
LOC_Os01g62050
OsAffx.21763.2.S1_s_at--1103--4671Chr01:36235849..36235873 (25 bp)
GCGGTCTCGAGTGCAATGCTGCGAC
LOC_Os01g62050
OsAffx.21763.2.S1_s_at--103--9391Chr01:36235843..36235867 (25 bp)
TCGAGTGCAATGCTGCGACTGCCAG
LOC_Os01g62050
OsAffx.21763.2.S1_s_at--884--9011Chr01:36235838..36235862 (25 bp)
TGCAATGCTGCGACTGCCAGCGAGG
LOC_Os01g62050
OsAffx.21763.2.S1_s_at--304--7331Chr01:36235814..36235838 (25 bp)
GTGCAGTGCACCTGGAACGTCGCAG
LOC_Os01g62050
OsAffx.21763.2.S1_s_at--91--8851Chr01:36235413..36235437 (25 bp)
TGATCAAGAATCGACATGGAAATGT
LOC_Os01g62050
OsAffx.21763.2.S1_s_at--398--8151Chr01:36235396..36235420 (25 bp)
GGAAATGTCATTATTATACGGAAGA
LOC_Os01g62050
Target Sequence 
AATGTGGATCACAGGTTCTCGATGGATTCACCAGCTAAGACGCGCGCCTCGCGGTCTCGAGTGCAATGCTGCGACTGCCA
GCGAGGTGCAGTGCACCTGGAACGTCGCAGGGCCGTGCGCGAGCAACAAGGCGGCATTTCGCTCTACGATTCAATGAATG
TAGGAATGATCAAGAATCGACATGGAAATGTCATTATTATACGGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21763.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis