Browse Element(s) Details


OsAffx.21779.3.S1_at

Description tigr:9630.m02680
TID=OsAffx.21779.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2816011/11hypothetical protein
LOC_Os04g210903/11retrotransposon protein, putative, unclassified
LOC_Os02g228103/11retrotransposon protein, putative, unclassified
LOC_Os04g138803/11retrotransposon protein, putative, unclassified
LOC_Os08g219403/11retrotransposon protein, putative, unclassified
LOC_Os06g010103/11retrotransposon protein, putative, unclassified
LOC_Os09g041503/11retrotransposon protein, putative, unclassified
LOC_Os09g171703/11retrotransposon protein, putative, unclassified
LOC_Os05g518903/11retrotransposon protein, putative, unclassified
LOC_Os07g300502/11retrotransposon protein, putative, unclassified
LOC_Os05g272602/11retrotransposon protein, putative, unclassified
LOC_Os10g148602/11retrotransposon protein, putative, unclassified
LOC_Os05g183101/11retrotransposon protein, putative, unclassified
LOC_Os10g165201/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g28120OsAffx.12244.1.S1_at11/112+16646594..16648663hypothetical protein
LOC_Os02g28120OsAffx.30891.1.S1_x_at2/112+16646594..16648663hypothetical protein
LOC_Os02g28130NANA2+16655024..16655625hypothetical protein
LOC_Os02g28140OsAffx.12245.1.S1_at7/112+16658237..16659346hypothetical protein
LOC_Os02g28150OsAffx.22896.1.S1_x_at1/112+16664420..16666081transposon protein, putative, unclassified
LOC_Os02g28160OsAffx.21779.3.S1_at11/112+16667596..16668271hypothetical protein
LOC_Os02g28170Os.9456.1.S1_at11/112+16672418..16674160Transferase family protein, expressed
LOC_Os02g28180OsAffx.13052.2.S1_at11/112+16674535..16677212transposon protein, putative, unclassified
LOC_Os02g28190NANA2+16684504..16684719hypothetical protein
LOC_Os02g28200OsAffx.12252.3.S1_x_at11/112+16686137..16687654Transferase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21779.3.S1_at--613--5351Chr02:16667731..16667755 (25 bp)
GAAGATAACTTCAGCCAAGCCACCG
LOC_Os02g28160
OsAffx.21779.3.S1_at--346--3251Chr02:16667746..16667770 (25 bp)
CAAGCCACCGTCAAACCAAAGAGAA
LOC_Os02g28160
OsAffx.21779.3.S1_at--1013--1771Chr02:16667752..16667772 (21 bp)
ACCGTCAAACCAAAGAGAAGTCATT
LOC_Os02g28160
OsAffx.21779.3.S1_at--488--53113Chr10:7532884..7532908 (25 bp)
GAAGGATGGTACTTTGCAGCCCAAC
LOC_Os10g14860
OsAffx.21779.3.S1_at--186--85912Chr10:7532890..7532914 (25 bp)
TGGTACTTTGCAGCCCAACTCTGGA
LOC_Os10g14860
OsAffx.21779.3.S1_at--203--33910Chr10:7904786..7904809 (24 bp)
CAGCCCAACTCTGGAGCGAACAGGA
LOC_Os10g16520
OsAffx.21779.3.S1_at--53--5892Chr07:17723868..17723892 (25 bp)
GAGCGAACAGGACAGTAATATGGAA
LOC_Os07g30050
OsAffx.21779.3.S1_at--164--7511Chr02:16668063..16668087 (25 bp)
GTGGAGCGCGTCAGCTAACCCGGCA
LOC_Os02g28160
OsAffx.21779.3.S1_at--1025--3351Chr02:16668074..16668098 (25 bp)
CAGCTAACCCGGCACCTTATAAAGT
LOC_Os02g28160
OsAffx.21779.3.S1_at--913--2991Chr02:16668179..16668203 (25 bp)
AATGATGCGACCCTTGATAGTTTCA
LOC_Os02g28160
OsAffx.21779.3.S1_at--1053--4571Chr02:16668185..16668209 (25 bp)
GCGACCCTTGATAGTTTCAGGGAAA
LOC_Os02g28160
Target Sequence 
GAAGATAACTTCAGCCAAGCCACCGTCAAACCAAAGAGAAGTCATTATGTAAGGAACTGCCCATGGAAGGTGTTCGCCAG
GTCACTTGAAAAGGACGAGAAGCAGTGCCCAGGAAGTAACCAAGCTCCAAGTCAGCCTACCGACAAGAAGGATGGTACTT
TGCAGCCCAACTCTGGAGCGAACAGGACAGTAATATGGAAGATGGATAATGGTTGGACCATGATCATCACTAGTTCAGAA
TTTACTCCTGAAGATGCCGCAAGGATACCCAAGCGTCAGAGACGAAAAAATACCTTCCGTGGAGCGCGTCAGCTAACCCG
GCACCTTATAAAGTACGGTCCGCCCAGACCCGAAGATGATGAATCAGGAGAACGGTTCTCTGCTGATGACGATGACGATG
ATGATGATGACGACAATGATGCGACCCTTGATAGTTTCAGGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21779.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis