Browse Element(s) Details


OsAffx.21914.1.S1_at

Description gb:NM_189564.1
DB_XREF= gi:34906211
GEN=P0666G04.12
TID=OsAffx.21914.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0666G04.12 (P0666G04.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0863011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08580Os.45973.1.A1_at1/111+4269633..4273135expressed protein
LOC_Os01g08590OsAffx.9715.1.S1_at4/111+4275673..4275915hypothetical protein
LOC_Os01g08600OsAffx.10967.4.S1_at8/111+4278556..4280424expressed protein
LOC_Os01g08600OsAffx.7664.1.S1_x_at1/111+4278556..4280424expressed protein
LOC_Os01g08600OsAffx.10967.1.S1_x_at1/111+4278556..4280424expressed protein
LOC_Os01g08610OsAffx.24445.1.S1_at11/111+4281428..4284885transposase, putative
LOC_Os01g08620NANA1+4287816..4288127hypothetical protein
LOC_Os01g08630OsAffx.21914.1.S1_at11/111+4294733..4299183expressed protein
LOC_Os01g08630OsAffx.21914.2.S1_at9/111+4294733..4299183expressed protein
LOC_Os01g08640NANA1+4301587..4301969transposon protein, putative, unclassified
LOC_Os01g08650Os.37600.1.S1_at10/111+4303684..4306737expressed protein
LOC_Os01g08660Os.7545.1.S1_a_at11/111+4310471..4312614Major intrinsic protein, expressed
LOC_Os01g08670Os.51447.1.S1_s_at11/111+4314803..4315582expressed protein
LOC_Os01g08680Os.34739.1.S1_a_at11/111+4319529..4323144expressed protein
LOC_Os01g08680Os.34739.2.S1_at1/111+4319529..4323144expressed protein
LOC_Os01g08690OsAffx.10970.1.S1_at9/111+4323380..4325632holocarboxylase synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21914.1.S1_at--596--10331Chr01:4295654..4295678 (25 bp)
TTTACACCACATGGTATTCCATTGT
LOC_Os01g08630
OsAffx.21914.1.S1_at--1132--2991Chr01:4295624..4295648 (25 bp)
AATGATCTGCTTGAGTACTTGAGGA
LOC_Os01g08630
OsAffx.21914.1.S1_at--324--6011Chr01:4295587..4295611 (25 bp)
GAGAGAATTCCAATGATGAGGCTAT
LOC_Os01g08630
OsAffx.21914.1.S1_at--1004--8271Chr01:4295559..4295583 (25 bp)
GGCATTTATTATCAATCACCCCTGT
LOC_Os01g08630
OsAffx.21914.1.S1_at--166--1811Chr01:4295542..4295566 (25 bp)
ACCCCTGTCTCCAATCTTATTTAGA
LOC_Os01g08630
OsAffx.21914.1.S1_at--496--351Chr01:4295491..4295515 (25 bp)
ATAACATTTATCCTAGACATCCTGG
LOC_Os01g08630
OsAffx.21914.1.S1_at--478--5671Chr01:4295476..4295500 (25 bp)
GACATCCTGGACATTCTACAACAAA
LOC_Os01g08630
OsAffx.21914.1.S1_at--371--2191Chr01:4295456..4295480 (25 bp)
ACAAATATATCTGCTCTGGGAACAT
LOC_Os01g08630
OsAffx.21914.1.S1_at--592--3891Chr01:4295441..4295465 (25 bp)
CTGGGAACATTTTCTTGGCAAGACA
LOC_Os01g08630
OsAffx.21914.1.S1_at--356--3271Chr01:4295418..4295442 (25 bp)
CAAAGTCGTCAGGTCCCAGAATTAC
LOC_Os01g08630
OsAffx.21914.1.S1_at--658--1031Chr01:4295408..4295432 (25 bp)
AGGTCCCAGAATTACGTCGTGCTTT
LOC_Os01g08630
Target Sequence 
TTTACACCACATGGTATTCCATTGTACTTTAATGATCTGCTTGAGTACTTGAGGAATTGTCCAAATGGAGAGAATTCCAA
TGATGAGGCTATTGTGGCATTTATTATCAATCACCCCTGTCTCCAATCTTATTTAGAGAGGATGTCACAATTAGAGCATC
TTGATAACATTTATCCTAGACATCCTGGACATTCTACAACAAATATATCTGCTCTGGGAACATTTTCTTGGCAAGACAAA
GTCGTCAGGTCCCAGAATTACGTCGTGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21914.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis