Browse Element(s) Details


OsAffx.21914.2.S1_at

Description tigr:9629.m00802
TID=OsAffx.21914.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g086309/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08580Os.45973.1.A1_at1/111+4269633..4273135expressed protein
LOC_Os01g08590OsAffx.9715.1.S1_at4/111+4275673..4275915hypothetical protein
LOC_Os01g08600OsAffx.10967.4.S1_at8/111+4278556..4280424expressed protein
LOC_Os01g08600OsAffx.7664.1.S1_x_at1/111+4278556..4280424expressed protein
LOC_Os01g08600OsAffx.10967.1.S1_x_at1/111+4278556..4280424expressed protein
LOC_Os01g08610OsAffx.24445.1.S1_at11/111+4281428..4284885transposase, putative
LOC_Os01g08620NANA1+4287816..4288127hypothetical protein
LOC_Os01g08630OsAffx.21914.1.S1_at11/111+4294733..4299183expressed protein
LOC_Os01g08630OsAffx.21914.2.S1_at9/111+4294733..4299183expressed protein
LOC_Os01g08640NANA1+4301587..4301969transposon protein, putative, unclassified
LOC_Os01g08650Os.37600.1.S1_at10/111+4303684..4306737expressed protein
LOC_Os01g08660Os.7545.1.S1_a_at11/111+4310471..4312614Major intrinsic protein, expressed
LOC_Os01g08670Os.51447.1.S1_s_at11/111+4314803..4315582expressed protein
LOC_Os01g08680Os.34739.1.S1_a_at11/111+4319529..4323144expressed protein
LOC_Os01g08680Os.34739.2.S1_at1/111+4319529..4323144expressed protein
LOC_Os01g08690OsAffx.10970.1.S1_at9/111+4323380..4325632holocarboxylase synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21914.2.S1_at--123--9871NONE
TACACCACATGGATGCCTTCACTTT
NONE
OsAffx.21914.2.S1_at--1112--8311Chr01:4295152..4295176 (25 bp)
GGCTGCATTTTCAAATTGCCTGGAG
LOC_Os01g08630
OsAffx.21914.2.S1_at--415--10691Chr01:4295137..4295161 (25 bp)
TTGCCTGGAGGAATATCTACCCCAT
LOC_Os01g08630
OsAffx.21914.2.S1_at--466--10131Chr01:4295124..4295148 (25 bp)
TATCTACCCCATGTATTAAAAGCGA
LOC_Os01g08630
OsAffx.21914.2.S1_at--505--10491Chr01:4295109..4295133 (25 bp)
TTAAAAGCGATAGCGCGCCTTGCTC
LOC_Os01g08630
OsAffx.21914.2.S1_at--413--6491Chr01:4295101..4295125 (25 bp)
GATAGCGCGCCTTGCTCAACATAAC
LOC_Os01g08630
OsAffx.21914.2.S1_at--914--4151Chr01:4295075..4295099 (25 bp)
CCCAAGGCCGGCAGTATCTAGTTGA
LOC_Os01g08630
OsAffx.21914.2.S1_at--946--9511NONE
TCTAGTTGACGTGAAGCAGCAATCT
NONE
OsAffx.21914.2.S1_at--202--3191Chr01:4294786..4294810 (25 bp)
CAATCTGGAGGTGCTGCGAATGAGT
LOC_Os01g08630
OsAffx.21914.2.S1_at--714--5271Chr01:4294769..4294793 (25 bp)
GAATGAGTCGTATCTTGCTCGCCTC
LOC_Os01g08630
OsAffx.21914.2.S1_at--775--10711Chr01:4294759..4294779 (21 bp)
TTGCTCGCCTCATGGAGGCATCATG
LOC_Os01g08630
Target Sequence 
TACACCACATGGATGCCTTCACTTTGCAAACAACTTCTTGAAACATGCACAAAACAGATTCATGTTACATGAAGTTGAGG
CTGCATTTTCAAATTGCCTGGAGGAATATCTACCCCATGTATTAAAAGCGATAGCGCGCCTTGCTCAACATAACCCCCAA
GGCCGGCAGTATCTAGTTGACGTGAAGCAGCAATCTGGAGGTGCTGCGAATGAGTCGTATCTTGCTCGCCTCATGGAGGC
ATCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21914.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis