Browse Element(s) Details


OsAffx.22004.2.S1_at

Description tigr:9636.m02554
TID=OsAffx.22004.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2598011/11hypothetical protein
LOC_Os03g248001/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g25940NANA8+15644963..15651118transposon protein, putative, unclassified
LOC_Os08g25950NANA8+15651760..15654987transposon protein, putative, unclassified
LOC_Os08g25960NANA8+15658138..15662567transposon protein, putative, Mutator sub-class
LOC_Os08g25970OsAffx.20387.1.S1_x_at1/118+15667757..15673982retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g25970OsAffx.8166.1.S1_at1/118+15667757..15673982retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g25980OsAffx.22004.2.S1_at11/118+15674473..15677490hypothetical protein
LOC_Os08g25980OsAffx.5752.1.S1_x_at1/118+15674473..15677490hypothetical protein
LOC_Os08g25980OsAffx.22004.1.S1_at1/118+15674473..15677490hypothetical protein
LOC_Os08g25990OsAffx.29362.2.S1_s_at11/118+15681980..15684667alcohol oxidase, putative
LOC_Os08g25990OsAffx.29362.1.S1_at10/118+15681980..15684667alcohol oxidase, putative
LOC_Os08g25990OsAffx.29362.1.S1_x_at10/118+15681980..15684667alcohol oxidase, putative
LOC_Os08g25990OsAffx.29362.2.S1_x_at8/118+15681980..15684667alcohol oxidase, putative
LOC_Os08g25999NANA8+15686857..15687751NA
LOC_Os08g26010NANA8+15690995..15695093transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g26020OsAffx.25936.1.S1_s_at9/118+15695986..15699024transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g26020OsAffx.25936.7.S1_s_at8/118+15695986..15699024transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g26020OsAffx.25936.2.S1_x_at6/118+15695986..15699024transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g26020OsAffx.25936.5.S1_x_at2/118+15695986..15699024transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22004.2.S1_at--141--6591Chr08:15675129..15675153 (25 bp)
GATTGCCCTCCAAACGCGTGTCTCG
LOC_Os08g25980
OsAffx.22004.2.S1_at--378--2371Chr08:15675118..15675142 (25 bp)
AAACGCGTGTCTCGCAGGACGACAT
LOC_Os08g25980
OsAffx.22004.2.S1_at--504--2391Chr08:15675087..15675111 (25 bp)
AAACTCACCCGTGGAGACGGGTGTG
LOC_Os08g25980
OsAffx.22004.2.S1_at--892--8651Chr08:15675071..15675090 (20 bp)
TGTGGCGATGGCTCCCTTAGATCTC
LOC_Os08g25980
OsAffx.22004.2.S1_at--609--7251Chr08:15674797..15674821 (25 bp)
GTCCATGGCCCATGTTTGCAGGGAG
LOC_Os08g25980
OsAffx.22004.2.S1_at--981--3491Chr08:15674794..15674818 (25 bp)
CATGGCCCATGTTTGCAGGGAGCTC
LOC_Os08g25980
OsAffx.22004.2.S1_at--157--7591Chr08:15674711..15674735 (25 bp)
GGGCATGTACTCAGCTCGAGGGCGT
LOC_Os08g25980
OsAffx.22004.2.S1_at--9--5273Chr06:1257725..1257744 (20 bp)
GAATGCCGTCGGTCGAGCCGGTACG
NONE
OsAffx.22004.2.S1_at--249--4271Chr08:15674581..15674605 (25 bp)
CCTCGAGTTTCTCTGTGATGGGTTC
LOC_Os08g25980
OsAffx.22004.2.S1_at--330--1211Chr08:15674576..15674600 (25 bp)
AGTTTCTCTGTGATGGGTTCGCTCG
LOC_Os08g25980
OsAffx.22004.2.S1_at--781--9511Chr08:15674572..15674596 (25 bp)
TCTCTGTGATGGGTTCGCTCGTTCT
LOC_Os08g25980
Target Sequence 
GATTGCCCTCCAAACGCGTGTCTCGCAGGACGACATGGAACGAAACTCACCCGTGGAGACGGGTGTGGCGATGGCTCCCT
TAGATCTCGAGAGTAGACTTGCTGACCAAGATCGTCGCATCCAATACTGGAAGACGAAGTGTGAAGTCGCGGAACTCGAG
AGGGCGATGGTGGAGGTGAAAAAAGACCAGGCCGTGGAGGCGCTCAAGGGTCGCGAGGTGTGGTTCGACTCTTATCTGAA
GAGTTGCTGCACGTCCATGGCCCATGTTTGCAGGGAGCTCCGGGTGCCCCGTGGAGATCCCGAGGAATCGGCGGCCGGCT
ACATCTCGTGGCTGAATGGGGCATGTACTCAGCTCGAGGGCGTCGGCAAGCGCATTGACGAAGCCCTGAAGCAGGAATGC
CGTCGGTCGAGCCGGTACGCCGGAGGGCATGTGTTGGCTTGCATCCGAGAGCATCGTCCGCAGCTGCACCTCGAGTTTCT
CTGTGATGGGTTCGCTCGTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22004.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis