Browse Element(s) Details


OsAffx.22073.1.S1_at

Description tigr:9629.m01305
TID=OsAffx.22073.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=DNA topoisomerase II (N-terminal region), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1331011/11DNA topoisomerase 2, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13270Os.34829.1.S1_at11/111+7397311..7401114Protein kinase PVPK-1, putative, expressed
LOC_Os01g13270OsAffx.2666.1.S1_x_at1/111+7397311..7401114Protein kinase PVPK-1, putative, expressed
LOC_Os01g13280Os.3634.1.S1_a_at11/111+7401700..7406442Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g13280Os.48021.1.S1_x_at3/111+7401700..7406442Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g13300Os.54636.1.S1_at11/111+7414105..7419317B3 DNA binding domain containing protein, expressed
LOC_Os01g13310OsAffx.22073.1.S1_at11/111+7421086..7424444DNA topoisomerase 2, putative
LOC_Os01g13320Os.46008.1.S1_at4/111+7426186..7428137Pectinesterase family protein, expressed
LOC_Os01g13330NANA1+7428736..7429804hypothetical protein
LOC_Os01g13340Os.55881.1.S1_at11/111+7434671..7435690Harpin-induced protein 1 containing protein, expressed
LOC_Os01g13350Os.3640.1.S1_at11/111+7435664..744002425.3 kDa vesicle transport protein, putative, expressed
LOC_Os01g13350OsAffx.23224.1.S1_at11/111+7435664..744002425.3 kDa vesicle transport protein, putative, expressed
LOC_Os01g13350OsAffx.25746.1.S1_x_at1/111+7435664..744002425.3 kDa vesicle transport protein, putative, expressed
LOC_Os01g13360Os.15937.1.S1_at11/111+7440488..7442924Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g13370Os.6809.2.S1_x_at11/111+7447643..7450485Ubiquitin ligase SINAT3, putative, expressed
LOC_Os01g13370Os.6809.1.S1_at10/111+7447643..7450485Ubiquitin ligase SINAT3, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006259biological_processDNA metabolism
GO:0006265biological_processDNA topological change
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003918molecular_functionDNA topoisomerase (ATP-hydrolyzing) activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22073.1.S1_at--407--6171Chr01:7421984..7422008 (25 bp)
GAGGATCACGTGACGCTCATGTGGA
LOC_Os01g13310
OsAffx.22073.1.S1_at--106--4911Chr01:7421881..7421905 (25 bp)
GCTTCAACGATTATGTGCGCCTGTA
LOC_Os01g13310
OsAffx.22073.1.S1_at--613--8771Chr01:7421860..7421884 (25 bp)
TGTATATCGATTCCCCTGTCAGTGA
LOC_Os01g13310
OsAffx.22073.1.S1_at--1037--1071Chr01:7421706..7421850 (25 bp)
AGCAGGGTTCCCAAGAGTTTACGAG
LOC_Os01g13310
OsAffx.22073.1.S1_at--224--8151Chr01:7421542..7421660 (25 bp)
GGACACTTTCAGCAGGTCAGCTTTG
LOC_Os01g13310
OsAffx.22073.1.S1_at--399--5451Chr01:7421490..7421514 (25 bp)
GAACCCATGTTGATTACGTCACGGA
LOC_Os01g13310
OsAffx.22073.1.S1_at--202--1611Chr01:7421466..7421490 (25 bp)
AGCTGATTACCACCCATCTGATGAA
LOC_Os01g13310
OsAffx.22073.1.S1_at--801--2671Chr01:7421392..7421416 (25 bp)
AAGCGCTATCTATGGGTCTTCCTCA
LOC_Os01g13310
OsAffx.22073.1.S1_at--259--8671Chr01:7421366..7421390 (25 bp)
TGTGATCATAGACAACCCTACCTTC
LOC_Os01g13310
OsAffx.22073.1.S1_at--789--10851Chr01:7421141..7421165 (25 bp)
TTGGCAATGGTCTTATCAGGCGTCT
LOC_Os01g13310
OsAffx.22073.1.S1_at--530--411Chr01:7421127..7421151 (25 bp)
ATCAGGCGTCTGTTTGGCTACCGTG
LOC_Os01g13310
Target Sequence 
GAGGATCACGTGACGCTCATGTGGAAGAGAGTGGTTGATATGGCAGGAATTCTAGGAGACTCCGTGCAAGTTGAGTGGGA
TGGCGTGAGGCTGCGTATAAACAGCTTCAACGATTATGTGCGCCTGTATATCGATTCCCCTGTCAGTGACAGATCAGGAG
CAGGGTTCCCAAGAGTTTACGAGAAGTTAAATGATTGGTGTGAGGTCTGTTTGAGCCTGAGTGATGATGGACACTTTCAG
CAGGTCAGCTTTGTAAATGGATTTGAGACACTAAAAGGTGGAACCCATGTTGATTACGTCACGGAGCTGATTACCACCCA
TCTGATGAACCTTCTGAATGAGCACTATGAGGAGTGTAACTTCAATGTAGATGATGTGAAGCGCTATCTATGGGTCTTCC
TCAATGTGATCATAGACAACCCTACCTTCGATTCACAGACCAAGGAGACGCTAACTACACCTCCAGGAAGGCTTGGGTCA
AAGCTTGAGCTTCCTAAAAGTTTCTCGAAAATAGCTTTTGGCAATGGTCTTATCAGGCGTCTGTTTGGCTACCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22073.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis