Browse Element(s) Details


OsAffx.22143.2.S1_at

Description tigr:9629.m00993
TID=OsAffx.22143.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1042011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10380NANA1+5460912..5464244transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g10390NANA1+5466921..5469815transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g10400Os.7992.1.S1_a_at10/111+5475291..5476628expressed protein
LOC_Os01g10400Os.7992.3.S1_x_at7/111+5475291..5476628expressed protein
LOC_Os01g10410Os.55650.1.A1_at6/111+5482366..5484912transposon protein, putative, unclassified
LOC_Os01g10410OsAffx.22143.1.S1_at6/111+5482366..5484912transposon protein, putative, unclassified
LOC_Os01g10410OsAffx.21756.5.A1_x_at1/111+5482366..5484912transposon protein, putative, unclassified
LOC_Os01g10410Os.7307.3.S1_x_at1/111+5482366..5484912transposon protein, putative, unclassified
LOC_Os01g10420OsAffx.22143.2.S1_at11/111+5487425..5488162hypothetical protein
LOC_Os01g10430Os.27867.1.S1_at11/111+5490191..5496183Cell division-related protein, putative, expressed
LOC_Os01g10440Os.45991.1.S1_x_at11/111+5504434..5506321glycosyltransferase family 14 protein, putative, expressed
LOC_Os01g10440Os.18296.1.S1_x_at11/111+5504434..5506321glycosyltransferase family 14 protein, putative, expressed
LOC_Os01g10440OsAffx.13408.1.S1_x_at1/111+5504434..5506321glycosyltransferase family 14 protein, putative, expressed
LOC_Os01g10450Os.7304.1.S1_at11/111+5507324..5511272protein kinase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22143.2.S1_at--33--7212Chr06:22589104..22589128 (25 bp)
GTCGACGGGAGGTTGGCGCCAGGGC
NONE
OsAffx.22143.2.S1_at--86--8371Chr01:5487880..5487904 (25 bp)
GGCGGGCAGCGGTGGCTCGATCCGT
LOC_Os01g10420
OsAffx.22143.2.S1_at--626--4012Chr04:20342079..20342125 (25 bp)
CGTCCGCGCGCAGGCAGAGGCTGTG
NONE
OsAffx.22143.2.S1_at--1048--1872Chr06:22588943..22588967 (25 bp)
ACGTTGAGCCGGCTTGTGCCGCCCT
NONE
OsAffx.22143.2.S1_at--684--8551Chr01:5487762..5487786 (25 bp)
TGGATCCGGCCATCCACGACCGGAT
LOC_Os01g10420
OsAffx.22143.2.S1_at--321--3331Chr01:5487748..5487772 (25 bp)
CACGACCGGATTTCGCCTAGGTGGG
LOC_Os01g10420
OsAffx.22143.2.S1_at--370--6531Chr01:5487740..5487764 (25 bp)
GATTTCGCCTAGGTGGGCTCCAGCG
LOC_Os01g10420
OsAffx.22143.2.S1_at--487--8131Chr01:5487550..5487574 (25 bp)
GGACTTCCTCGTTGCTGGCCGAGTG
LOC_Os01g10420
OsAffx.22143.2.S1_at--663--6671Chr01:5487540..5487564 (25 bp)
GTTGCTGGCCGAGTGTTTTTCCCTT
LOC_Os01g10420
OsAffx.22143.2.S1_at--1135--4651Chr01:5487537..5487561 (25 bp)
GCTGGCCGAGTGTTTTTCCCTTCCT
LOC_Os01g10420
OsAffx.22143.2.S1_at--535--6132Chr04:20341727..20341784 (25 bp)
GAGGGCGGAGGCTTCGGTTTGCCGT
NONE
Target Sequence 
GTCGACGGGAGGTTGGCGCCAGGGCAGGAGACGGCGCGGAGACGGCGGCAGGCAGGGGCGACGTCGCCGTGGGCGGGCAG
CGGTGGCTCGATCCGTCCGCGCGCAGGCAGAGGCTGTGGCGGCGTGGTGGTCATGACGACGACGGAGCTGCAGCGGCGCG
GACGTTGAGCCGGCTTGTGCCGCCCTGGCTGGATCCGGCCATCCACGACCGGATTTCGCCTAGGTGGGCTCCAGCGGGGT
TGTTCGCTGGCATCTCATTGGCGACGAGCCTCCTGCCGAGCAGGGGGCTTCTTTGGCCAGTGGAGGTTTGGTGGCTCAAG
GGCGGCAATGCATGGATGTGGAGTTGGCGGGACGACGGCTTGTGCTGGCGTGAAGCAGGAATGGGGCTTGATGTCCGCGG
CGGACTTCCTCGTTGCTGGCCGAGTGTTTTTCCCTTCCTTCGGTTTCCCCCCTTCTTTGGCCGGACCCTTTTCTGGTCGT
GGGGAACGCTAGGGGGAGGGCGGAGGCTTCGGTTTGCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22143.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis