Browse Element(s) Details


OsAffx.222.1.S1_at

Description gb:NM_196134.1
DB_XREF= gi:37533627
TID=OsAffx.222.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OJ1341F06.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2276011/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22720OsAffx.30503.1.S1_at11/1110+11469998..11473960hypothetical protein
LOC_Os10g22730Os.7322.1.S1_at11/1110+11475856..11481847expressed protein
LOC_Os10g22730Os.52023.1.S1_at10/1110+11475856..11481847expressed protein
LOC_Os10g22740OsAffx.8205.1.S1_at11/1110+11491121..11492666hypothetical protein
LOC_Os10g22750Os.46834.1.S1_at11/1110+11494547..11495515expressed protein
LOC_Os10g22760OsAffx.222.1.S1_at11/1110+11498343..11499747transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g22770OsAffx.31801.1.S1_at9/1110+11504486..11506836hypothetical protein
LOC_Os10g22770OsAffx.28844.1.S1_at5/1110+11504486..11506836hypothetical protein
LOC_Os10g22770OsAffx.31801.4.S1_at1/1110+11504486..11506836hypothetical protein
LOC_Os10g22780OsAffx.30505.1.S1_at7/1110+11509753..11511602hypothetical protein
LOC_Os10g22780OsAffx.8626.1.S1_at2/1110+11509753..11511602hypothetical protein
LOC_Os10g22790NANA10+11514015..11514408hypothetical protein
LOC_Os10g22800NANA10+11516058..11518527retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22810NANA10+11522432..11524070hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.222.1.S1_at--194--9971Chr10:11498553..11498574 (22 bp)
TACCAGCAGATCCTTCAACCGGTGT
LOC_Os10g22760
OsAffx.222.1.S1_at--978--9271Chr10:11498762..11498786 (25 bp)
TCCGGCAATGGAGGTGTCCGAGCTC
LOC_Os10g22760
OsAffx.222.1.S1_at--611--4171Chr10:11498816..11498840 (25 bp)
CCCTTCTTCGAATTTGGAGTCTTTG
LOC_Os10g22760
OsAffx.222.1.S1_at--989--4591Chr10:11498851..11498875 (25 bp)
GCGACTTGGTGCGTCATTGTTTCAA
LOC_Os10g22760
OsAffx.222.1.S1_at--495--391Chr10:11498881..11498905 (25 bp)
ATCAGTGGCTGAGGACGACGCCAAT
LOC_Os10g22760
OsAffx.222.1.S1_at--223--7251Chr10:11498928..11498948 (21 bp)
GTCCCGATGGTCAGCCCACGGAGAA
LOC_Os10g22760
OsAffx.222.1.S1_at--1066--7631Chr10:11499423..11499447 (25 bp)
GGGAGACGCCAGGAAATTTCGCAAT
LOC_Os10g22760
OsAffx.222.1.S1_at--138--6551Chr10:11499466..11499490 (25 bp)
GATTTTCTTATAGAGCTGTTCCAAG
LOC_Os10g22760
OsAffx.222.1.S1_at--323--6251Chr10:11499502..11499526 (25 bp)
GATGGATCCACAGCATATTTCCCTG
LOC_Os10g22760
OsAffx.222.1.S1_at--71--10271Chr10:11499604..11499628 (25 bp)
TTTGAGAACAGTCCCATGAGCACCA
LOC_Os10g22760
OsAffx.222.1.S1_at--645--8771Chr10:11499660..11499684 (25 bp)
TGTTTCCACAGCTTCAAGTCCTGGA
LOC_Os10g22760
Target Sequence 
TACCAGCAGATCCTTCAACCGGTGTCCGGCAATGGAGGTGTCCGAGCTCGTGCGCCCTCCATGTCGCATGACGGGCCCCC
CTTCTTCGAATTTGGAGTCTTTGGAGGAGGTGGGCGACTTGGTGCGTCATTGTTTCAAGGGACATCAGTGGCTGAGGACG
ACGCCAATGATGAAGACGAAGAGGACATCGGTCCCGATGGTCAGCCCACGGAGAAGGGAGACGCCAGGAAATTTCGCAAT
GGCAACCCTGAGTACTTAGATTTTCTTATAGAGCTGTTCCAAGGTGTTGCAGTTGATGGATCCACAGCATATTTCCCTGG
TTTTGATGAAGACGAAGAGGAAGGGGAAGAGGAAGCAGGGGAAACAAGAAGAGGGGAAACAACAACATGGGATGGTTTTG
AGAACAGTCCCATGAGCACCAACAGCAGGAAGAGAGGGAGCAGCAGCTGTGATGTTTCCACAGCTTCAAGTCCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.222.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis