Browse Element(s) Details


OsAffx.22206.1.S1_at

Description tigr:9629.m01590
TID=OsAffx.22206.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1599011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15934NANA1+8970406..8974984retrotransposon, putative, centromere-specific
LOC_Os01g15950NANA1+8975807..8976082expressed protein
LOC_Os01g15960OsAffx.23265.1.S1_at11/111+8980566..8980895hypothetical protein
LOC_Os01g15970Os.4750.1.S1_x_at11/111+8983055..8984199expressed protein
LOC_Os01g15970Os.55385.1.S1_at11/111+8983055..8984199expressed protein
LOC_Os01g15979Os.94.1.S1_at11/111+8985713..8989380gb protein, putative, expressed
LOC_Os01g15990OsAffx.22206.1.S1_at11/111+8992117..8993694expressed protein
LOC_Os01g15990OsAffx.27180.1.S1_x_at1/111+8992117..8993694expressed protein
LOC_Os01g16000Os.96.1.S1_at9/111+9001392..9004857SEC14 cytosolic factor family protein, putative, expressed
LOC_Os01g16010Os.9177.1.S1_at11/111+9009804..9013402Breast carcinoma amplified sequence 2 family protein, expressed
LOC_Os01g16010OsAffx.22205.1.S1_at10/111+9009804..9013402Breast carcinoma amplified sequence 2 family protein, expressed
LOC_Os01g16020OsAffx.22204.1.S1_x_at11/111+9015013..9016386Geranylgeranyl hydrogenase, putative, expressed
LOC_Os01g16020OsAffx.22204.1.S1_at11/111+9015013..9016386Geranylgeranyl hydrogenase, putative, expressed
LOC_Os01g16030Os.35495.1.S1_s_at11/111+9016651..9020854ADP-ribosylation factor, putative, expressed
LOC_Os01g16030Os.35495.1.S1_at10/111+9016651..9020854ADP-ribosylation factor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22206.1.S1_at--177--5831Chr01:8993118..8993142 (25 bp)
GACCGACGAGGAGGCAATGAGCGAC
LOC_Os01g15990
OsAffx.22206.1.S1_at--558--8791Chr01:8993156..8993180 (25 bp)
TGTTCGACCTCGAGAGCTTCGCGGC
LOC_Os01g15990
OsAffx.22206.1.S1_at--212--5371Chr01:8993254..8993278 (25 bp)
GAAGACCTTCCGTACGGCGCCGCGG
LOC_Os01g15990
OsAffx.22206.1.S1_at--1039--3851Chr01:8993308..8993332 (25 bp)
CTGAGCGAGTGCATGTACGCGCCGA
LOC_Os01g15990
OsAffx.22206.1.S1_at--830--8751Chr01:8993321..8993345 (25 bp)
TGTACGCGCCGAGCGAGGTGAGCGT
LOC_Os01g15990
OsAffx.22206.1.S1_at--1157--9291Chr01:8993419..8993443 (25 bp)
TCCGCCTGCTGCGTCGAGGAGTTCA
LOC_Os01g15990
OsAffx.22206.1.S1_at--951--6171Chr01:8993434..8993458 (25 bp)
GAGGAGTTCAGCTTCGTCCCGCCGC
LOC_Os01g15990
OsAffx.22206.1.S1_at--1155--1591Chr01:8993557..8993581 (25 bp)
AGCTGCCGGTGCGAGAAGGCTGTGA
LOC_Os01g15990
OsAffx.22206.1.S1_at--159--2951Chr01:8993572..8993596 (25 bp)
AAGGCTGTGAGCGTCGGGCCAACTC
LOC_Os01g15990
OsAffx.22206.1.S1_at--975--9252Chr01:8993609..8993633 (25 bp)
TCCGGCCGGAGGTGAACGTCAAGAC
LOC_Os01g15990
OsAffx.22206.1.S1_at--298--3951Chr01:8993615..8993639 (25 bp)
CGGAGGTGAACGTCAAGACCACCGG
LOC_Os01g15990
Target Sequence 
GACCGACGAGGAGGCAATGAGCGACGCGAGCTCGGACCTGTTCGACCTCGAGAGCTTCGCGGCGTCGTCGTCGTTCCCGA
CCACGTGCCGCGGGCGCAGCAGCCGGCGCAACTCGCGGGAGGACGACGACGACGACGAAGACCTTCCGTACGGCGCCGCG
GCCGCGGCCGCCGCCGCCGTCGAGCCGGCGCTGAGCGAGTGCATGTACGCGCCGAGCGAGGTGAGCGTGGTGTGGAGCGT
GGCCACGGCGGAGGGCGGCGCGTTCGACGCGGCCAGCGTCGCCAACTTCTCCAGCGCGGCGTCCGCCTGCTGCGTCGAGG
AGTTCAGCTTCGTCCCGCCGCCTGACTCCGCCGCCACCGCTGGCGGCGGCGGCCACGAGGGCTTCACCGCCGCCATGTCG
CGCAGCGCCGCCCGCAAGAAAGGCGGCGGGTTCTTGAGCAGCTGCCGGTGCGAGAAGGCTGTGAGCGTCGGGCCAACTCC
CGTCCGGATGGTCCGGCCGGAGGTGAACGTCAAGACCACCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22206.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis