Browse Element(s) Details


OsAffx.22251.1.S1_x_at

Description gb:NM_187752.1
DB_XREF= gi:34902589
TID=OsAffx.22251.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) Hypothetical protein (OJ1123F12.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0679011/11hypothetical protein
LOC_Os03g067807/11hypothetical protein
LOC_Os03g067705/11hypothetical protein
LOC_Os03g068103/11expressed protein
LOC_Os03g068002/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06720Os.7378.1.S1_at11/113+3396435..3403979expressed protein
LOC_Os03g06730Os.30598.1.S1_at11/113+3404015..3406073expressed protein
LOC_Os03g06730Os.30598.2.S1_x_at11/113+3404015..3406073expressed protein
LOC_Os03g06740Os.9134.1.S1_at10/113+3406654..3411381Glutathione reductase, chloroplast precursor, putative, expressed
LOC_Os03g06750OsAffx.24996.1.S1_at11/113+3412135..3414404expressed protein
LOC_Os03g06760Os.34216.1.S1_x_at11/113+3414135..3418449exocyst complex component Sec15, putative, expressed
LOC_Os03g06770OsAffx.22251.1.S1_x_at5/113+3422940..3424117hypothetical protein
LOC_Os03g06770OsAffx.12758.1.S1_x_at2/113+3422940..3424117hypothetical protein
LOC_Os03g06770OsAffx.22252.1.S1_x_at2/113+3422940..3424117hypothetical protein
LOC_Os03g06770OsAffx.22252.2.S1_x_at1/113+3422940..3424117hypothetical protein
LOC_Os03g06780OsAffx.22252.2.S1_x_at11/113+3426110..3426364hypothetical protein
LOC_Os03g06780OsAffx.22251.1.S1_x_at7/113+3426110..3426364hypothetical protein
LOC_Os03g06780OsAffx.22252.1.S1_x_at3/113+3426110..3426364hypothetical protein
LOC_Os03g06780OsAffx.12758.1.S1_x_at2/113+3426110..3426364hypothetical protein
LOC_Os03g06790OsAffx.22251.1.S1_x_at11/113+3428614..3428835hypothetical protein
LOC_Os03g06790OsAffx.22252.1.S1_x_at4/113+3428614..3428835hypothetical protein
LOC_Os03g06790OsAffx.22252.2.S1_x_at4/113+3428614..3428835hypothetical protein
LOC_Os03g06790OsAffx.12758.1.S1_x_at2/113+3428614..3428835hypothetical protein
LOC_Os03g06800OsAffx.22252.1.S1_x_at11/113+3431853..3432119hypothetical protein
LOC_Os03g06800OsAffx.22252.2.S1_x_at4/113+3431853..3432119hypothetical protein
LOC_Os03g06800OsAffx.22251.1.S1_x_at2/113+3431853..3432119hypothetical protein
LOC_Os03g06800OsAffx.12758.1.S1_x_at1/113+3431853..3432119hypothetical protein
LOC_Os03g06810OsAffx.12758.1.S1_at11/113+3433880..3434470expressed protein
LOC_Os03g06810OsAffx.12758.1.S1_x_at11/113+3433880..3434470expressed protein
LOC_Os03g06810OsAffx.22252.2.S1_x_at4/113+3433880..3434470expressed protein
LOC_Os03g06810OsAffx.22251.1.S1_x_at3/113+3433880..3434470expressed protein
LOC_Os03g06810OsAffx.22252.1.S1_x_at1/113+3433880..3434470expressed protein
LOC_Os03g06820OsAffx.3155.1.S1_at11/113+3437819..3438052hypothetical protein
LOC_Os03g06820OsAffx.3155.1.S1_x_at11/113+3437819..3438052hypothetical protein
LOC_Os03g06830OsAffx.24997.1.S1_at11/113+3441932..3442201hypothetical protein
LOC_Os03g06840Os.18038.1.S1_at11/113+3447352..3448250GRF zinc finger family protein, expressed
LOC_Os03g06850Os.38278.2.S1_x_at11/113+3449132..3449882B3 DNA binding domain containing protein, expressed
LOC_Os03g06850Os.38278.2.S1_at11/113+3449132..3449882B3 DNA binding domain containing protein, expressed
LOC_Os03g06850Os.38278.1.S1_at3/113+3449132..3449882B3 DNA binding domain containing protein, expressed
LOC_Os03g06860Os.36451.2.S1_x_at11/113+3450288..3452699transposon protein, putative, unclassified, expressed
LOC_Os03g06860Os.36451.1.S1_at3/113+3450288..3452699transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22251.1.S1_x_at--444--4253Chr03:3432046..3432070 (25 bp)
CCGTGCTGCTGATGCAGTGCTGCAA
LOC_Os03g06800
OsAffx.22251.1.S1_x_at--846--6435Chr03:3434375..3434399 (25 bp)
GATCATGGCGGCGAGGCTGCTGGAA
LOC_Os03g06810
OsAffx.22251.1.S1_x_at--120--4273Chr03:3434301..3434325 (25 bp)
CCGGCGAGCTCATCTTGCAGGTGCT
LOC_Os03g06810
OsAffx.22251.1.S1_x_at--414--5913Chr03:3434296..3434320 (25 bp)
GAGCTCATCTTGCAGGTGCTCAAGG
LOC_Os03g06810
OsAffx.22251.1.S1_x_at--433--9052Chr03:3428681..3428705 (25 bp)
TGCAGGTGCTCAAGGGAGGGTCGCC
LOC_Os03g06790
OsAffx.22251.1.S1_x_at--866--8152Chr03:3428649..3428673 (25 bp)
GGCAATGGTTGTCACCAAGGTCCCG
LOC_Os03g06790
OsAffx.22251.1.S1_x_at--848--5152Chr03:3428648..3428672 (25 bp)
GCAATGGTTGTCACCAAGGTCCCGG
LOC_Os03g06790
OsAffx.22251.1.S1_x_at--777--3192Chr03:3428647..3428671 (25 bp)
CAATGGTTGTCACCAAGGTCCCGGA
LOC_Os03g06790
OsAffx.22251.1.S1_x_at--519--2952Chr03:3428646..3428670 (25 bp)
AATGGTTGTCACCAAGGTCCCGGAG
LOC_Os03g06790
OsAffx.22251.1.S1_x_at--51--832Chr03:3428645..3428669 (25 bp)
ATGGTTGTCACCAAGGTCCCGGAGG
LOC_Os03g06790
OsAffx.22251.1.S1_x_at--340--8573Chr03:3428644..3428668 (25 bp)
TGGTTGTCACCAAGGTCCCGGAGGC
LOC_Os03g06790
Target Sequence 
CCGTGCTGCTGATGCAGTGCTGCAANGCGATCATGGCGGCGAGGCTGCTGGAAGGNGANNTGGGCAGCTGGNTGCAGGGN
CAGGGCGGCGTCGCCGGCGAGCTCATCTTGCAGGTGCTCAAGGGAGGGTCGCCNCCGNNAGGCAATGGTTGTCACCAAGG
TCCCGGAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22251.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis