Browse Element(s) Details


OsAffx.22394.1.S1_at

Description gb:NM_186929.1
DB_XREF= gi:34900943
GEN=OJ1354_H07.22
TID=OsAffx.22394.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (OJ1354_H07.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g155907/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15540Os.29967.1.S1_at11/117+9003509..9006804GAF domain containing protein, expressed
LOC_Os07g15550NANA7+9011871..9013223hypothetical protein
LOC_Os07g15560OsAffx.28462.1.S1_at11/117+9015235..9016752retrotransposon protein, putative, unclassified
LOC_Os07g15570OsAffx.28463.1.S1_at11/117+9020589..9023862PPR986-12, putative, expressed
LOC_Os07g15580OsAffx.1430.2.A1_at11/117+9026189..9027824hypothetical protein
LOC_Os07g15580Os.55234.1.S1_s_at1/117+9026189..9027824hypothetical protein
LOC_Os07g15590OsAffx.22394.2.S1_at10/117+9030075..9032765hypothetical protein
LOC_Os07g15590OsAffx.22394.1.S1_at7/117+9030075..9032765hypothetical protein
LOC_Os07g15600Os.6091.1.A1_at11/117+9034315..9037530f13j11 PRLI-interacting factor G, putative, expressed
LOC_Os07g15610OsAffx.10156.1.S1_x_at11/117+9045841..9046369hypothetical protein
LOC_Os07g15620OsAffx.22492.1.S1_at1/117+9054773..9060601retrotransposon protein, putative, unclassified
LOC_Os07g15620OsAffx.22492.1.S1_x_at1/117+9054773..9060601retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22394.1.S1_at--389--3831Chr07:9032851..9032875 (25 bp)
CTGCGGTGTCGCTAGGGCCTAGGGA
NONE
OsAffx.22394.1.S1_at--344--3711Chr07:9032833..9032857 (25 bp)
CTAGGGAATGGAGTGGTAGCCACCA
NONE
OsAffx.22394.1.S1_at--1046--7831Chr07:9032819..9032843 (25 bp)
GGTAGCCACCAGCAGGTGGATCCAA
NONE
OsAffx.22394.1.S1_at--985--1051Chr07:9032806..9032830 (25 bp)
AGGTGGATCCAAGGACCGCTCGCCA
NONE
OsAffx.22394.1.S1_at--59--9471Chr07:9032491..9032515 (25 bp)
TCTGTCGGTGGTCTCGTTCCTTCGG
LOC_Os07g15590
OsAffx.22394.1.S1_at--547--3791Chr07:9032380..9032503 (25 bp)
CTCGTTCCTTCGGTTTTGTGCAGAA
LOC_Os07g15590
OsAffx.22394.1.S1_at--353--9251Chr07:9032375..9032498 (25 bp)
TCCTTCGGTTTTGTGCAGAACTGCA
LOC_Os07g15590
OsAffx.22394.1.S1_at--416--5471Chr07:9032358..9032382 (25 bp)
GAACTGCAGACTACATTTGGAGGAT
LOC_Os07g15590
OsAffx.22394.1.S1_at--1032--7932Chr06:6504487..6504510 (23 bp)
GGATTTTGTTCAGTGCAGACTGCAT
NONE
OsAffx.22394.1.S1_at--126--3431Chr07:9032322..9032346 (25 bp)
CAGACTGCATTTGGATATGGCCAAT
LOC_Os07g15590
OsAffx.22394.1.S1_at--161--7951Chr07:9032310..9032334 (25 bp)
GGATATGGCCAATTTTGTTTGTGTA
LOC_Os07g15590
Target Sequence 
CTGCGGTGTCGCTAGGGCCTAGGGAATGGAGTGGTAGCCACCAGCAGGTGGATCCAAGGACCGCTCGCCACGCCGGCCCT
TCTCCCCGCTGCGTCAGTGACGCCGCCGTCATGCCGGCCCTCCTCTCCGCCGCGCTGCTCCGCCTCCTGCCATGCTCCCG
CCGCCGCTACGCAGGGGGAGGAAGGAACAAGGGAAGATCGTTGGTAGCTCTGTCGGTGGTCTCGTTCCTTCGGTTTTGTG
CAGAACTGCAGACTACATTTGGAGGATTTTGTTCAGTGCAGACTGCATTTGGATATGGCCAATTTTGTTTGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22394.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis