Browse Element(s) Details


OsAffx.22461.2.S1_x_at

Description gb:NM_191175.1
DB_XREF= gi:34909433
GEN=OSJNBa0014K08.10
TID=OsAffx.22461.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0014K08.10 (OSJNBa0014K08.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5415011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g660808/11retrotransposon protein, putative, unclassified
LOC_Os12g222108/11retrotransposon protein, putative, unclassified
LOC_Os07g113907/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g512606/11hypothetical protein
LOC_Os02g052306/11retrotransposon protein, putative, unclassified, expressed
LOC_Os06g471704/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54100Os.42148.1.S1_x_at11/111+31438140..31442707protein kinase family protein, putative, expressed
LOC_Os01g54100Os.7493.1.S1_at11/111+31438140..31442707protein kinase family protein, putative, expressed
LOC_Os01g54119Os.35400.1.S1_at11/111+31447556..31459579retrotransposon protein, putative, unclassified, expressed
LOC_Os01g54140OsAffx.21632.1.S1_at11/111+31461100..31463986hypothetical protein
LOC_Os01g54150OsAffx.22461.2.S1_x_at11/111+31466273..31469303retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g54150OsAffx.22461.3.S1_x_at3/111+31466273..31469303retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g54160NANA1+31471880..31477780retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g54170OsAffx.21631.1.S1_at11/111+31484241..31485073expressed protein
LOC_Os01g54180OsAffx.21629.1.S1_x_at9/111+31489987..31492000hypothetical protein
LOC_Os01g54180OsAffx.16924.1.S1_x_at8/111+31489987..31492000hypothetical protein
LOC_Os01g54180OsAffx.21629.2.S1_x_at2/111+31489987..31492000hypothetical protein
LOC_Os01g54190Os.34819.2.S1_s_at11/111+31492537..31495621expressed protein
LOC_Os01g54190Os.5530.2.S1_a_at11/111+31492537..31495621expressed protein
LOC_Os01g54190Os.42141.1.S1_x_at11/111+31492537..31495621expressed protein
LOC_Os01g54190Os.5530.2.S1_s_at11/111+31492537..31495621expressed protein
LOC_Os01g54190Os.5530.2.S1_x_at9/111+31492537..31495621expressed protein
LOC_Os01g54190Os.5530.1.S1_at9/111+31492537..31495621expressed protein
LOC_Os01g54190Os.5530.3.S1_x_at7/111+31492537..31495621expressed protein
LOC_Os01g54190OsAffx.5404.1.S1_at6/111+31492537..31495621expressed protein
LOC_Os01g54190Os.33350.1.S1_x_at3/111+31492537..31495621expressed protein
LOC_Os01g54190Os.34819.2.S1_x_at2/111+31492537..31495621expressed protein
LOC_Os01g54190Os.33350.1.S1_at2/111+31492537..31495621expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22461.2.S1_x_at--744--2453Chr01:38676170..38676194 (25 bp)
AAAATTGCCGCCAACTTCTTCTGAA
LOC_Os01g66080
OsAffx.22461.2.S1_x_at--1047--5996Chr06:28603580..28603604 (25 bp)
GAGACCGTTCGAATCGCGTTGCGAA
LOC_Os06g47170
OsAffx.22461.2.S1_x_at--1059--8337Chr07:6264204..6264228 (25 bp)
GGCTGACATCAGCTTGCTATCGGAA
LOC_Os07g11390
OsAffx.22461.2.S1_x_at--678--2811Chr01:31468972..31468996 (25 bp)
AAGATAGTGTTACTCCCTTTGCATC
LOC_Os01g54150
OsAffx.22461.2.S1_x_at--581--10274Chr07:6264301..6264325 (25 bp)
TTTGCATCTCGCTGCTCGAAGACTG
LOC_Os07g11390
OsAffx.22461.2.S1_x_at--116--1414Chr07:6264320..6264344 (25 bp)
AGACTGCTGTGGAGAGCCTTTCGGC
LOC_Os07g11390
OsAffx.22461.2.S1_x_at--188--8435Chr07:6264342..6264366 (25 bp)
GGCCTGTCTGCTTTCAAATGGGTGT
LOC_Os07g11390
OsAffx.22461.2.S1_x_at--514--4396Chr07:6264418..6264442 (25 bp)
GCCAAATTTGCACAGCTTCGAGATG
LOC_Os07g11390
OsAffx.22461.2.S1_x_at--349--6336Chr07:6264439..6264463 (25 bp)
GATGCAGCTCAACCCGTCGTAAAGG
LOC_Os07g11390
OsAffx.22461.2.S1_x_at--142--2817Chr07:6264500..6264567 (25 bp)
AAGATACCCTGAGGTCTCTTCGAGC
LOC_Os07g11390
OsAffx.22461.2.S1_x_at--350--1271Chr01:31469226..31469250 (25 bp)
AGATCAAAATCACAGCTGGCCAGTT
LOC_Os01g54150
Target Sequence 
AAAATTGCCGCCAACTTCTTCTGAAAAGTTGCGAGACCGTTCGAATCGCGTTGCGAAGTCTAGGGGCTGACATCAGCTTG
CTATCGGAAGAAAATACCTTAGCAGCTGTGGGAAAATGGTTCGAGGAATTTTCCATTGGGCTAAAAGATAGTGTTACTCC
CTTTGCATCTCGCTGCTCGAAGACTGCTGTGGAGAGCCTTTCGGCCTGTCTGCTTTCAAATGGGTGTGAACACTTTACCA
CCCTTAAAGCTGATATCCAAGGTATGCTTAATGATGAAGCCAAATTTGCACAGCTTCGAGATGCAGCTCAACCCGTCGTA
AAGGCTTTCCAAGTTCTTTACTGGAAGAAGAAAGGATATGAAGATACCCTGAGGTCTCTTCGAGCATCTCTTGCCTCAAG
ATCAAAATCACAGCTGGCCAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22461.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis