Browse Element(s) Details


OsAffx.22461.3.S1_x_at

Description tigr:9634.m04595
TID=OsAffx.22461.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4717011/11hypothetical protein
LOC_Os02g512608/11hypothetical protein
LOC_Os02g052308/11retrotransposon protein, putative, unclassified, expressed
LOC_Os07g113906/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g660805/11retrotransposon protein, putative, unclassified
LOC_Os12g222104/11retrotransposon protein, putative, unclassified
LOC_Os01g541503/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47140NANA6+28576702..28578098hypothetical protein
LOC_Os06g47150Os.22735.1.S1_at11/116+28585494..28589262Auxin response factor 16, putative, expressed
LOC_Os06g47160NANA6+28592052..28594822hypothetical protein
LOC_Os06g47170OsAffx.22461.3.S1_x_at11/116+28601041..28604023hypothetical protein
LOC_Os06g47170OsAffx.22461.2.S1_x_at4/116+28601041..28604023hypothetical protein
LOC_Os06g47180NANA6+28606081..28610082retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g47190NANA6+28610401..28611962retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g47200Os.11393.1.S2_at11/116+28616449..28619312Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os06g47200Os.11393.1.S1_at11/116+28616449..28619312Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os06g47210Os.54309.1.S1_at11/116+28619995..28627008Peptidase family M3 containing protein, expressed
LOC_Os06g47220OsAffx.5134.1.S1_at10/116+28628473..28630394expressed protein
LOC_Os06g47220OsAffx.30891.1.S1_x_at2/116+28628473..28630394expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22461.3.S1_x_at--486--9833Chr07:6264075..6264099 (25 bp)
TAAAGAACTCGAACTCGCCTGCAAA
LOC_Os07g11390
OsAffx.22461.3.S1_x_at--1048--5996Chr06:28603580..28603604 (25 bp)
GAGACCGTTCGAATCGCGTTGCGAA
LOC_Os06g47170
OsAffx.22461.3.S1_x_at--1058--8337Chr07:6264204..6264228 (25 bp)
GGCTGACATCAGCTTGCTATCGGAA
LOC_Os07g11390
OsAffx.22461.3.S1_x_at--270--2336Chr07:6264283..6264307 (25 bp)
AAAGATAGCGTTACTCCCTTTGCAT
LOC_Os07g11390
OsAffx.22461.3.S1_x_at--582--10274Chr07:6264301..6264391 (25 bp)
TTTGCATCTCGCTGCTCGAAAACTG
LOC_Os07g11390
OsAffx.22461.3.S1_x_at--844--2373Chr06:28603728..28603752 (25 bp)
AAACTGCTGTGGAGAGCCTTTCGGC
LOC_Os06g47170
OsAffx.22461.3.S1_x_at--187--8431Chr06:28603750..28603774 (25 bp)
GGCCTGTCTGCGTTCAAATGGGTGT
LOC_Os06g47170
OsAffx.22461.3.S1_x_at--356--6235Chr07:6264415..6264439 (25 bp)
GAGGCCAAATTTGCACAGCTTCGAG
LOC_Os07g11390
OsAffx.22461.3.S1_x_at--1084--9691Chr06:28603855..28603879 (25 bp)
TCAACCCATCGTAAAGGCTTTCCAA
LOC_Os06g47170
OsAffx.22461.3.S1_x_at--732--5337Chr07:6264499..6264523 (25 bp)
GAAGATACCCTGAGGTCTCTCCGAG
LOC_Os07g11390
OsAffx.22461.3.S1_x_at--464--1232Chr06:28603946..28603970 (25 bp)
AGATTAAAGTCACAGCCGGCCAGTT
LOC_Os06g47170
Target Sequence 
TAAAGAACTCGAACTCGCCTGCAAAAATCAAAGCGAGAAGATATCTGCTTTAGAGCTCGAGAACGAAAGTTGCCGCCAAC
TTCTTCTGAAAAGTTGCGAGACCGTTCGAATCGCGTTGCGAAGTCTAGGGGCTGACATCAGCTTGCTATCGGAAGAAAAT
ACTTTAGCAGCTGTGGGAAAATGGTTCGAGGAATTTTCCATTGGGCTAAAAGATAGCGTTACTCCCTTTGCATCTCGCTG
CTCGAAAACTGCTGTGGAGAGCCTTTCGGCCTGTCTGCGTTCAAATGGGTGTGAACACTTTACCACCCTTAAAGCTGATA
TACAAGGTATGCTTAATGATGAGGCCAAATTTGCACAGCTTCGAGATGCAGCTCAACCCATCGTAAAGGCTTTCCAAGTG
CTTTACTGGAAGAAGAAAGGATATGAAGATACCCTGAGGTCTCTCCGAGCATCTCTTGCCTCAAGATTAAAGTCACAGCC
GGCCAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22461.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis