Browse Element(s) Details


OsAffx.22470.1.S1_at

Description tigr:9635.m00634
TID=OsAffx.22470.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0693011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06880Os.18428.1.S1_at11/117+3358301..3359859PrMC3, putative, expressed
LOC_Os07g06890Os.47952.1.A1_at3/117+3361792..3368287FAD linked oxidases, C-terminal domain containing protein, expressed
LOC_Os07g06900OsAffx.28316.1.S1_at11/117+3370897..3373090F-box domain containing protein
LOC_Os07g06910OsAffx.21754.1.S1_x_at1/117+3376409..3377539retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g06920NANA7+3378934..3382385retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g06930OsAffx.22470.1.S1_at11/117+3384720..3385371hypothetical protein
LOC_Os07g06940Os.17841.1.S1_at11/117+3393161..3398476Valyl-tRNA synthetase, putative, expressed
LOC_Os07g06940Os.17841.2.S1_x_at9/117+3393161..3398476Valyl-tRNA synthetase, putative, expressed
LOC_Os07g06950Os.6600.1.S1_at11/117+3410019..3422806Ubiquitin carboxyl-terminal hydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22470.1.S1_at--78--5431Chr07:3385289..3385313 (25 bp)
GAAGCCTCTTCCCTAGAACCGCTGA
LOC_Os07g06930
OsAffx.22470.1.S1_at--1136--5431Chr07:3384898..3385298 (25 bp)
GAACCGCTGAGGCATCGAGGAACTT
LOC_Os07g06930
OsAffx.22470.1.S1_at--1033--4131Chr07:3384894..3385294 (25 bp)
CGCTGAGGCATCGAGGAACTTCAAC
LOC_Os07g06930
OsAffx.22470.1.S1_at--1090--2851Chr07:3384861..3384885 (25 bp)
AAGTGCTCACCCCAAGCTTAAAATA
LOC_Os07g06930
OsAffx.22470.1.S1_at--497--9811Chr07:3384844..3384868 (25 bp)
TTAAAATAAACTGCCCAACCACTGG
LOC_Os07g06930
OsAffx.22470.1.S1_at--1070--2631Chr07:3384828..3384852 (25 bp)
AACCACTGGGCTGCCCTCTGTTGAT
LOC_Os07g06930
OsAffx.22470.1.S1_at--607--6651Chr07:3384809..3384833 (25 bp)
GTTGATCACACCAATCACTTGATCA
LOC_Os07g06930
OsAffx.22470.1.S1_at--207--3031Chr07:3384797..3384821 (25 bp)
AATCACTTGATCAAGCCCCTGGGTT
LOC_Os07g06930
OsAffx.22470.1.S1_at--173--3251Chr07:3384786..3384810 (25 bp)
CAAGCCCCTGGGTTGTGCTAGAGAT
LOC_Os07g06930
OsAffx.22470.1.S1_at--804--10031Chr07:3384768..3384792 (25 bp)
TAGAGATGCCAACACAACCGCTTTA
LOC_Os07g06930
OsAffx.22470.1.S1_at--177--2471Chr07:3384758..3384782 (25 bp)
AACACAACCGCTTTATACAGTACAA
LOC_Os07g06930
Target Sequence 
GAAGCCTCTTCCCTAGAACCGCTGAGGCATCGAGGAACTTCAACACCTTTCCAAGTGCTCACCCCAAGCTTAAAATAAAC
TGCCCAACCACTGGGCTGCCCTCTGTTGATCACACCAATCACTTGATCAAGCCCCTGGGTTGTGCTAGAGATGCCAACAC
AACCGCTTTATACAGTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22470.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis