Browse Element(s) Details


OsAffx.22471.1.S1_x_at

Description gb:NM_186415.1
DB_XREF= gi:34899915
GEN=OJ1714_H10.42
TID=OsAffx.22471.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1714_H10.42 (OJ1714_H10.42), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0681011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06750OsAffx.28312.1.S1_at6/117+3295140..3295667VQ motif family protein, expressed
LOC_Os07g06750OsAffx.28314.1.S1_x_at1/117+3295140..3295667VQ motif family protein, expressed
LOC_Os07g06760OsAffx.28312.2.S1_at11/117+3299802..3300365VQ motif family protein
LOC_Os07g06760OsAffx.28314.1.S1_x_at2/117+3299802..3300365VQ motif family protein
LOC_Os07g06770OsAffx.28313.2.S1_s_at11/117+3305087..3306718expressed protein
LOC_Os07g06780NANA7+3307407..3311111transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g06790OsAffx.28314.1.S1_x_at11/117+3311764..3312297VQ motif family protein, expressed
LOC_Os07g06800OsAffx.16129.1.S1_at10/117+3314786..33164703-oxo-5-alpha-steroid 4-dehydrogenase family protein, expressed
LOC_Os07g06810OsAffx.22471.1.S1_x_at11/117+3317638..3320290hypothetical protein
LOC_Os07g06820Os.17949.1.S1_a_at11/117+3322061..3328234RIO1 family protein, expressed
LOC_Os07g06820Os.31112.3.S1_x_at10/117+3322061..3328234RIO1 family protein, expressed
LOC_Os07g06820Os.31112.3.S1_at10/117+3322061..3328234RIO1 family protein, expressed
LOC_Os07g06820OsAffx.18607.1.S1_x_at3/117+3322061..3328234RIO1 family protein, expressed
LOC_Os07g06830Os.16540.1.S1_at11/117+3331186..3332575alpha/beta hydrolase fold family protein, putative, expressed
LOC_Os07g06840Os.17690.1.S1_at11/117+3340497..3341896PrMC3, putative, expressed
LOC_Os07g06850Os.27810.1.S1_at11/117+3343080..3344851PrMC3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22471.1.S1_x_at--555--1851Chr07:3319842..3319866 (25 bp)
ACGACGACGGAAGCAACCAGCAAGA
LOC_Os07g06810
OsAffx.22471.1.S1_x_at--846--2631Chr07:3319828..3319852 (25 bp)
AACCAGCAAGAGCAGCTGCAGCCTC
LOC_Os07g06810
OsAffx.22471.1.S1_x_at--1125--9351Chr07:3319800..3319824 (25 bp)
TCGAACACCTGGACGCGGAGGCAGA
LOC_Os07g06810
OsAffx.22471.1.S1_x_at--356--7631Chr07:3319773..3319797 (25 bp)
GGGAGAGCCGCTCGGTGGTTGCGTC
LOC_Os07g06810
OsAffx.22471.1.S1_x_at--239--10711Chr07:3319755..3319779 (25 bp)
TTGCGTCGCCGCCTCCGTCGGAGAA
LOC_Os07g06810
OsAffx.22471.1.S1_x_at--1114--9271Chr07:3319742..3319766 (25 bp)
TCCGTCGGAGAAGGTGTTCGCGTAC
LOC_Os07g06810
OsAffx.22471.1.S1_x_at--757--4231Chr07:3319683..3319707 (25 bp)
CCGAGGTGACGGAGAATCTGTACGC
LOC_Os07g06810
OsAffx.22471.1.S1_x_at--137--491Chr07:3319668..3319692 (25 bp)
ATCTGTACGCGAGGGTGGAGGCGCT
LOC_Os07g06810
OsAffx.22471.1.S1_x_at--748--4791Chr07:3319646..3319670 (25 bp)
GCTCGAGGTGGACTGGTCGGCGATG
LOC_Os07g06810
OsAffx.22471.1.S1_x_at--687--6151Chr07:3319490..3319514 (25 bp)
GAGGTTCTCGGTGCTCGCCGTTTGC
LOC_Os07g06810
OsAffx.22471.1.S1_x_at--790--6711Chr07:3319487..3319511 (25 bp)
GTTCTCGGTGCTCGCCGTTTGCAAG
LOC_Os07g06810
Target Sequence 
ACGACGACGGAAGCAACCAGCAAGAGCAGCTGCAGCCTCCCGTCGAACACCTGGACGCGGAGGCAGACAGGGAGAGCCGC
TCGGTGGTTGCGTCGCCGCCTCCGTCGGAGAAGGTGTTCGCGTACGCGGCCGCGACGGCGCCGGCCGCGGATTGCGGCGC
CGAGGTGACGGAGAATCTGTACGCGAGGGTGGAGGCGCTCGAGGTGGACTGGTCGGCGATGCGGAGGGAGGTGGCGGCGC
TGCGGGCGGAGCGCGCGCAGGCGGTGCTGGCGAGGGAGGTGGCGCGGAGGCTGTGCCGGGAGGCGGCGGTGGCCGGCGAG
AGGGGCGCCGTCGCCGTGGCGGCGGAGAGGCCGAGGTTCTCGGTGCTCGCCGTTTGCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22471.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis