Browse Element(s) Details


OsAffx.22502.1.S1_x_at

Description tigr:9631.m02107
TID=OsAffx.22502.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2113010/11hypothetical protein
LOC_Os04g417404/11expressed protein
LOC_Os07g040503/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21080Os.10949.1.S1_at11/113+11981181..11986623Guanine nucleotide exchange factor, putative, expressed
LOC_Os03g21090Os.31565.1.S1_at11/113+11987024..11991337Axi 1 protein, putative, expressed
LOC_Os03g21100OsAffx.10065.1.S1_at11/113+11992096..11995314transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g21100Os.53970.1.S1_at1/113+11992096..11995314transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g21110OsAffx.12964.1.S1_at10/113+11998042..12000162emp24/gp25L/p24 family protein
LOC_Os03g21120Os.8675.1.S1_at11/113+12000616..12006112Nucleoside-triphosphatase, putative, expressed
LOC_Os03g21120OsAffx.10053.1.S1_x_at1/113+12000616..12006112Nucleoside-triphosphatase, putative, expressed
LOC_Os03g21130OsAffx.22502.1.S1_x_at10/113+12007759..12014194hypothetical protein
LOC_Os03g21130OsAffx.22502.1.S1_at10/113+12007759..12014194hypothetical protein
LOC_Os03g21130Os.5967.1.S1_x_at3/113+12007759..12014194hypothetical protein
LOC_Os03g21130Os.53420.1.S1_x_at3/113+12007759..12014194hypothetical protein
LOC_Os03g21140Os.49095.1.S1_at11/113+12025846..12029933Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22502.1.S1_x_at--181--9871Chr03:12012600..12012624 (25 bp)
TACAGGTTCGGACCCCTATCTTACA
LOC_Os03g21130
OsAffx.22502.1.S1_x_at--1129--8091NONE
GGACCCCTATCTTACAGGCGTTCCT
NONE
OsAffx.22502.1.S1_x_at--16--4372Chr07:1713921..1713944 (24 bp)
CCAAGCTTGCCGACGACCTGGGCGT
NONE
OsAffx.22502.1.S1_x_at--831--4771Chr03:12008460..12008484 (25 bp)
GCTGCGTGCTATGCTCGCCAAGGAG
LOC_Os03g21130
OsAffx.22502.1.S1_x_at--223--4411Chr03:12008434..12008453 (20 bp)
GCCACGGTCGGCAACAACGGTGAAA
LOC_Os03g21130
OsAffx.22502.1.S1_x_at--968--2551Chr03:12008140..12008164 (25 bp)
AACTGAACCAGGTAACATGCTGAAG
LOC_Os03g21130
OsAffx.22502.1.S1_x_at--484--8712Chr04:24522983..24523007 (25 bp)
TGTCCCCGTGGACGATCCTGTCGAC
LOC_Os04g41740
OsAffx.22502.1.S1_x_at--763--8713Chr07:1714203..1714227 (25 bp)
TGTCGACCACCAAGTCCGTCAAGTA
LOC_Os07g04050
OsAffx.22502.1.S1_x_at--269--9733Chr07:1714221..1714257 (25 bp)
TCAAGTACATCGACGCGGTGCCGGG
LOC_Os07g04050
OsAffx.22502.1.S1_x_at--276--7793Chr07:1714333..1714356 (24 bp)
GGTCGTACAGGCTGGAGTTCTCCGT
LOC_Os07g04050
OsAffx.22502.1.S1_x_at--1142--7691Chr03:12007839..12007863 (25 bp)
GGGTCCCTGACCGTGCAAGCGTACG
LOC_Os03g21130
Target Sequence 
TACAGGTTCGGACCCCTATCTTACAGGCGTTCCTCGCCAAGCTTGCCGACGACCTGGGCGTCGTGCTGCGTGCTATGCTC
GCCAAGGAGGAGCTGGCCACGGTCGGCAACAACGGTGAAATAATCGAACAAACTGAACCAGGTAACATGCTGAAGAATGG
GGGCTTTGAGGAGGGCCCGTACATCTTCCCCAACACGTCCTGGGGCGTGCTGGTGCCGCCCATGGACGAGGACGACCACA
CGCCGCTGTCCCCGTGGACGATCCTGTCGACCACCAAGTCCGTCAAGTACATCGACGCGGTGCCGGGCGGCGCCCGCGCG
GTTGAGCTGGTGTCCGGCATGGAGACGGCGATGGTGCAGGAGGTGAGCACCGTGCCCGGGCGGTCGTACAGGCTGGAGTT
CTCCGTCGGGGACGCCAGCGACGGGTGCTCCGGGTCCCTGACCGTGCAAGCGTACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22502.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis