Browse Element(s) Details


OsAffx.22585.1.S1_at

Description tigr:9634.m00564
TID=OsAffx.22585.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=WRKY DNA -binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0636011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06320Os.13026.1.S1_at11/116+2939005..2941453FLOWERING LOCUS T protein, putative, expressed
LOC_Os06g06320Os.15230.1.S1_at1/116+2939005..2941453FLOWERING LOCUS T protein, putative, expressed
LOC_Os06g06330Os.50507.1.S1_at11/116+2944576..2945332expressed protein
LOC_Os06g06340NANA6+2946712..2947192Protease inhibitor/seed storage/LTP family protein
LOC_Os06g06350Os.51669.1.S1_at7/116+2951884..2956630AMP-binding enzyme family protein, expressed
LOC_Os06g06360OsAffx.22585.1.S1_at11/116+2958755..2962007WRKY DNA binding domain containing protein, expressed
LOC_Os06g06370Os.5158.1.S1_at10/116+2965770..2972191expressed protein
LOC_Os06g06380Os.33898.2.S1_x_at11/116+2972686..2978468NB-ARC domain containing protein, expressed
LOC_Os06g06380Os.33898.1.S1_at11/116+2972686..2978468NB-ARC domain containing protein, expressed
LOC_Os06g06390OsAffx.22584.1.S1_at11/116+2979427..2983290NB-ARC domain containing protein, expressed
LOC_Os06g06400Os.33082.1.S1_at11/116+2984134..2989868NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22585.1.S1_at--1072--1591Chr06:2961517..2961541 (25 bp)
AGCTGCTCGTCAACTTCAGGCACGG
LOC_Os06g06360
OsAffx.22585.1.S1_at--855--4791Chr06:2961521..2961545 (25 bp)
GCTCGTCAACTTCAGGCACGGCCTG
LOC_Os06g06360
OsAffx.22585.1.S1_at--1017--5091Chr06:2961536..2961560 (25 bp)
GCACGGCCTGAAGGTGGAGACCAAC
LOC_Os06g06360
OsAffx.22585.1.S1_at--705--2891Chr06:2961546..2961570 (25 bp)
AAGGTGGAGACCAACGGGCTGGCTC
LOC_Os06g06360
OsAffx.22585.1.S1_at--247--1871Chr06:2961682..2961706 (25 bp)
ACGACGCGCTAGGAGGAGGGTGTAA
LOC_Os06g06360
OsAffx.22585.1.S1_at--160--7711Chr06:2961699..2961723 (25 bp)
GGGTGTAATAATTTCTCCTCGCCGC
LOC_Os06g06360
OsAffx.22585.1.S1_at--362--6011Chr06:2961756..2961780 (25 bp)
GAGAGCTACTTCTCCATGGAGCACT
LOC_Os06g06360
OsAffx.22585.1.S1_at--465--831Chr06:2961771..2961795 (25 bp)
ATGGAGCACTCCTACGAGCCACGGG
LOC_Os06g06360
OsAffx.22585.1.S1_at--577--8351Chr06:2961801..2961825 (25 bp)
GGCGGCCACTTCGTCATGAGCCGAG
LOC_Os06g06360
OsAffx.22585.1.S1_at--162--4671Chr06:2961904..2961928 (25 bp)
GCGGGTTCGACTACCCGCTGTACCA
LOC_Os06g06360
OsAffx.22585.1.S1_at--128--6691Chr06:2961953..2961977 (25 bp)
GTTCCCGCCATTGTTTGGCCACGCT
LOC_Os06g06360
Target Sequence 
AGCTGCTCGTCAACTTCAGGCACGGCCTGAAGGTGGAGACCAACGGGCTGGCTCCTCCGCCGCCGCCGCCTCCGACGACG
ACGACGAACTTCCACGACGACCAGCACTTCTGCTTCCCCTCCATGCCGCCGTTCCACGCCGGGGTGGGGCCACCGCCGCC
GCCGGACGACGCGCTAGGAGGAGGGTGTAATAATTTCTCCTCGCCGCCGTTCGTCTCGCCGGCCGGTTCGGCCGCCGGCG
AGAGCTACTTCTCCATGGAGCACTCCTACGAGCCACGGGGAGGCGGCGGCCACTTCGTCATGAGCCGAGGGGACTCGTCG
GAGCTCCACGAGGTCGTCTCCGCCGCCGCCTCCTCCTCCGCCGTGGTCGACCCTGCCGCCGCCGCCGGCGGGTTCGACTA
CCCGCTGTACCACGGCGAGGTCGACCCGCACCTGCCGTTCCCGCCATTGTTTGGCCACGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22585.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis