Browse Element(s) Details


OsAffx.22606.1.S1_at

Description gb:NM_185392.1
DB_XREF= gi:34897869
TID=OsAffx.22606.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) EST D24970(R2869) corresponds to a region of the predicted gene.~hypothetical protein (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g249101/11Phosphofructokinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24870OsAffx.17881.1.S1_at11/119+14843149..14846843hypothetical protein
LOC_Os09g24880NANA9+14859622..14860185retrotransposon protein, putative, unclassified
LOC_Os09g24890NANA9+14863763..14864002hypothetical protein
LOC_Os09g24900Os.23266.1.S1_at11/119+14866405..14869920Ankyrin protein kinase, putative, expressed
LOC_Os09g24910Os.5137.1.S1_at11/119+14869985..14877174Phosphofructokinase family protein, expressed
LOC_Os09g24910OsAffx.22606.1.S1_at1/119+14869985..14877174Phosphofructokinase family protein, expressed
LOC_Os09g24924Os.22767.1.S1_at10/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24924OsAffx.30009.1.S1_at8/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24924OsAffx.6233.1.S1_at3/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24924Os.47306.1.S1_x_at1/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24924OsAffx.9066.1.S1_x_at1/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24940OsAffx.17882.1.S1_at11/119+14894144..14894926hypothetical protein
LOC_Os09g24954OsAffx.17883.1.S1_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed
LOC_Os09g24954Os.22673.1.S1_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed
LOC_Os09g24954OsAffx.17884.1.S1_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed
LOC_Os09g24954OsAffx.17884.1.S1_s_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0005945cellular_component6-phosphofructokinase complex
GO:0003872molecular_function6-phosphofructokinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22606.1.S1_at--97--6631Chr06:642453..642477 (25 bp)
GTTGGTCCGGTCCACGTTCTGATTG
NONE
OsAffx.22606.1.S1_at--649--7391Chr06:642461..642485 (25 bp)
GGTCCACGTTCTGATTGCCAGTTTG
NONE
OsAffx.22606.1.S1_at--228--4372Chr06:642464..642488 (25 bp)
CCACGTTCTGATTGCCAGTTTGCCA
NONE
OsAffx.22606.1.S1_at--269--2551Chr06:642491..642515 (25 bp)
AACTCCAACTCCATATGGCACGTGG
NONE
OsAffx.22606.1.S1_at--819--5991Chr06:642533..642557 (25 bp)
GAGACCCAGGCCCACAAGTCAGGCA
NONE
OsAffx.22606.1.S1_at--444--8411Chr06:642541..642565 (25 bp)
GGCCCACAAGTCAGGCAGCAATTTT
NONE
OsAffx.22606.1.S1_at--706--2191Chr06:642546..642570 (25 bp)
ACAAGTCAGGCAGCAATTTTGACCC
NONE
OsAffx.22606.1.S1_at--284--4851Chr06:642590..642614 (25 bp)
GCTATCTCTGCGAGGCGGTCCGGTC
NONE
OsAffx.22606.1.S1_at--690--7791Chr06:642606..642630 (25 bp)
GGTCCGGTCCCACCCGTCAGAGAGA
NONE
OsAffx.22606.1.S1_at--39--1811Chr06:642617..642641 (25 bp)
ACCCGTCAGAGAGACGTCCTGATCG
NONE
OsAffx.22606.1.S1_at--910--1351Chr06:642624..642647 (24 bp)
AGAGAGACGTCCTGATCGCGGCAGT
NONE
Target Sequence 
GTTGGTCCGGTCCACGTTCTGATTGCCAGTTTGCCACCAACTCCAACTCCATATGGCACGTGGGGCCCACCACGCCCGTG
GAGACCCAGGCCCACAAGTCAGGCAGCAATTTTGACCCGCCTACCGCCGCTGCGGCGGCTATCTCTGCGAGGCGGTCCGG
TCCCACCCGTCAGAGAGACGTCCTGATCGCGGCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22606.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis