Browse Element(s) Details


OsAffx.22608.2.S1_at

Description gb:NM_194557.1
DB_XREF= gi:37530473
TID=OsAffx.22608.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative retroelement (OSJNBa0015O22.23), mRNA.
PROD=putative retroelement
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0209011/11retrotransposon protein, putative, LINE subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02050NANA10+647765..648052hypothetical protein
LOC_Os10g02060OsAffx.27688.1.S1_at1/1110+660396..660691NA
LOC_Os10g02070Os.158.1.S1_at11/1110+661285..663015Peroxidase N precursor, putative, expressed
LOC_Os10g02080OsAffx.30237.1.S1_x_at11/1110+664246..667474POT family protein
LOC_Os10g02080OsAffx.30237.2.S1_x_at2/1110+664246..667474POT family protein
LOC_Os10g02080Os.46546.2.S1_x_at1/1110+664246..667474POT family protein
LOC_Os10g02090OsAffx.22608.2.S1_at11/1110+669635..671524retrotransposon protein, putative, LINE subclass
LOC_Os10g02090OsAffx.22608.3.S1_at4/1110+669635..671524retrotransposon protein, putative, LINE subclass
LOC_Os10g02090OsAffx.22608.3.S1_x_at2/1110+669635..671524retrotransposon protein, putative, LINE subclass
LOC_Os10g02090OsAffx.5724.1.S1_x_at1/1110+669635..671524retrotransposon protein, putative, LINE subclass
LOC_Os10g02100OsAffx.30238.1.S1_at11/1110+673621..675994POT family protein, expressed
LOC_Os10g02110OsAffx.6552.1.S1_at9/1110+679328..679890hypothetical protein
LOC_Os10g02120Os.46012.3.S1_x_at9/1110+683496..689374retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g02120Os.46012.2.S1_x_at8/1110+683496..689374retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g02120Os.27088.1.A1_x_at4/1110+683496..689374retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g02120Os.54691.1.S1_x_at1/1110+683496..689374retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22608.2.S1_at--199--1811Chr10:670633..670657 (25 bp)
ACGCGTCTTCTTGTGGACGGGTACA
LOC_Os10g02090
OsAffx.22608.2.S1_at--794--5831Chr10:669964..669988 (25 bp)
GACCTCCTCCTAAAGCGTGGCTTGG
LOC_Os10g02090
OsAffx.22608.2.S1_at--597--1635Chr12:19236127..19236146 (20 bp)
AGCGTGGCTTGGATAGTCATTCGGC
NONE
OsAffx.22608.2.S1_at--547--10851Chr10:669943..669967 (25 bp)
TTGGATAGTCATTCGGCCAGCCCCT
LOC_Os10g02090
OsAffx.22608.2.S1_at--894--4311Chr10:669921..669945 (25 bp)
CCTTCTGTGGTCAAGAGCTTGAGAC
LOC_Os10g02090
OsAffx.22608.2.S1_at--91--71Chr10:669876..669900 (25 bp)
ATTGCATCTTCGCTCGGCAAGTTTG
LOC_Os10g02090
OsAffx.22608.2.S1_at--912--6151Chr10:669804..669828 (25 bp)
GAGGTAGCTGTCTCCAAGATTGGTG
LOC_Os10g02090
OsAffx.22608.2.S1_at--734--3651Chr10:669777..669801 (25 bp)
CTTCTTCTAGGGTTGGCTTGCCGGG
LOC_Os10g02090
OsAffx.22608.2.S1_at--1004--455Chr06:6082447..6082471 (25 bp)
ATCTCCGGGCCAGTTTCGATTCTAT
NONE
OsAffx.22608.2.S1_at--748--1195Chr05:25682558..25682723 (25 bp)
AGTTTCGATTCTATGGTCCTCCTAG
NONE
OsAffx.22608.2.S1_at--170--1351Chr10:669682..669706 (25 bp)
AGAGTTTTTGACTCTGCATTGTCAT
LOC_Os10g02090
Target Sequence 
ACGCGTCTTCTTGTGGACGGGTACAGATGCGGTTCATGGGGGACAGTGCCAGCTCTCGCCGGGTGTCAGAGACCGTCTTG
TTTGGTGTTGGACGAGCGACCAGCGCTACTCTGCGCGTTCAGCGTACCAGGCCTTCTTTTTTGGCCAGCACTCCTTTGCC
TGTGCCGATCTTCTCTGGCACGCGAAGGGCCCTGCTAAATGCAAGTTCTTCCTCTGGTTTGCATTTCAGCGGCGCTGCTG
GACGGCCGACCTCCTCCTAAAGCGTGGCTTGGATAGTCATTCGGCCAGCCCCTTCTGTGGTCAAGAGCTTGAGACAGCGA
ACCACATCCTCCTCGATTGCATCTTCGCTCGGCAAGTTTGGCTCCGTGTGCTGTCGCCTCTTGGTTGGACTACCCTCTCT
CCTCCCCGAGGTAGCTGTCTCCAAGATTGGTGGCCTTCTTCTAGGGTTGGCTTGCCGGGGCATCTCCGGGCCAGTTTCGA
TTCTATGGTCCTCCTAGTCTCTTGGCAACTGTGGAAAGAGCGGAACTCTAGAGTTTTTGACTCTGCATTGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22608.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis