Browse Element(s) Details


OsAffx.6552.1.S1_at

Description tigr:9638.m00114
TID=OsAffx.6552.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g021109/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02060OsAffx.27688.1.S1_at1/1110+660396..660691NA
LOC_Os10g02070Os.158.1.S1_at11/1110+661285..663015Peroxidase N precursor, putative, expressed
LOC_Os10g02080OsAffx.30237.1.S1_x_at11/1110+664246..667474POT family protein
LOC_Os10g02080OsAffx.30237.2.S1_x_at2/1110+664246..667474POT family protein
LOC_Os10g02080Os.46546.2.S1_x_at1/1110+664246..667474POT family protein
LOC_Os10g02090OsAffx.22608.2.S1_at11/1110+669635..671524retrotransposon protein, putative, LINE subclass
LOC_Os10g02090OsAffx.22608.3.S1_at4/1110+669635..671524retrotransposon protein, putative, LINE subclass
LOC_Os10g02090OsAffx.22608.3.S1_x_at2/1110+669635..671524retrotransposon protein, putative, LINE subclass
LOC_Os10g02090OsAffx.5724.1.S1_x_at1/1110+669635..671524retrotransposon protein, putative, LINE subclass
LOC_Os10g02100OsAffx.30238.1.S1_at11/1110+673621..675994POT family protein, expressed
LOC_Os10g02110OsAffx.6552.1.S1_at9/1110+679328..679890hypothetical protein
LOC_Os10g02120Os.46012.3.S1_x_at9/1110+683496..689374retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g02120Os.46012.2.S1_x_at8/1110+683496..689374retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g02120Os.27088.1.A1_x_at4/1110+683496..689374retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g02120Os.54691.1.S1_x_at1/1110+683496..689374retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6552.1.S1_at--281--8511Chr10:679418..679840 (25 bp)
TGGCACACCTTCTCTGCAGAATATT
LOC_Os10g02110
OsAffx.6552.1.S1_at--868--8231Chr10:679417..679839 (25 bp)
GGCACACCTTCTCTGCAGAATATTA
LOC_Os10g02110
OsAffx.6552.1.S1_at--782--5111NONE
GCACACCTTCTCTGCAGAATATTAT
NONE
OsAffx.6552.1.S1_at--836--2151Chr10:679414..679836 (25 bp)
ACACCTTCTCTGCAGAATATTATAA
LOC_Os10g02110
OsAffx.6552.1.S1_at--378--10591Chr10:679409..679831 (25 bp)
TTCTCTGCAGAATATTATAACTCAC
LOC_Os10g02110
OsAffx.6552.1.S1_at--770--9031NONE
TGCAGAATATTATAACTCACACGTT
NONE
OsAffx.6552.1.S1_at--780--1471Chr10:679401..679425 (25 bp)
AGAATATTATAACTCACACGTTTAT
LOC_Os10g02110
OsAffx.6552.1.S1_at--485--351Chr10:679393..679417 (25 bp)
ATAACTCACACGTTTATACAGAAAG
LOC_Os10g02110
OsAffx.6552.1.S1_at--861--3731Chr10:679389..679413 (25 bp)
CTCACACGTTTATACAGAAAGTTTC
LOC_Os10g02110
OsAffx.6552.1.S1_at--1000--2591Chr10:679387..679411 (25 bp)
CACACGTTTATACAGAAAGTTTCAA
LOC_Os10g02110
OsAffx.6552.1.S1_at--484--6832Chr10:679369..679393 (25 bp)
GTTTCAAATTATTTATGGTATGTAC
LOC_Os10g02110
Target Sequence 
TGGCACACCTTCTCTGCAGAATATTATAACTCACACGTTTATACAGAAAGTTTCAAATTATTTATGGTATGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6552.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis