Browse Element(s) Details


OsAffx.30238.1.S1_at

Description tigr:9638.m00113
TID=OsAffx.30238.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=POT family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0210011/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02060OsAffx.27688.1.S1_at1/1110+660396..660691NA
LOC_Os10g02070Os.158.1.S1_at11/1110+661285..663015Peroxidase N precursor, putative, expressed
LOC_Os10g02080OsAffx.30237.1.S1_x_at11/1110+664246..667474POT family protein
LOC_Os10g02080OsAffx.30237.2.S1_x_at2/1110+664246..667474POT family protein
LOC_Os10g02080Os.46546.2.S1_x_at1/1110+664246..667474POT family protein
LOC_Os10g02090OsAffx.22608.2.S1_at11/1110+669635..671524retrotransposon protein, putative, LINE subclass
LOC_Os10g02090OsAffx.22608.3.S1_at4/1110+669635..671524retrotransposon protein, putative, LINE subclass
LOC_Os10g02090OsAffx.22608.3.S1_x_at2/1110+669635..671524retrotransposon protein, putative, LINE subclass
LOC_Os10g02090OsAffx.5724.1.S1_x_at1/1110+669635..671524retrotransposon protein, putative, LINE subclass
LOC_Os10g02100OsAffx.30238.1.S1_at11/1110+673621..675994POT family protein, expressed
LOC_Os10g02110OsAffx.6552.1.S1_at9/1110+679328..679890hypothetical protein
LOC_Os10g02120Os.46012.3.S1_x_at9/1110+683496..689374retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g02120Os.46012.2.S1_x_at8/1110+683496..689374retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g02120Os.27088.1.A1_x_at4/1110+683496..689374retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g02120Os.54691.1.S1_x_at1/1110+683496..689374retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30238.1.S1_at--536--4511Chr10:674125..674149 (25 bp)
GCCGACATACGACAGGGTCCTCATG
LOC_Os10g02100
OsAffx.30238.1.S1_at--151--4231Chr10:674050..674074 (25 bp)
CCGCATCGGCGTCGGAATGGTCTTC
LOC_Os10g02100
OsAffx.30238.1.S1_at--329--7191Chr10:674040..674064 (25 bp)
GTCGGAATGGTCTTCGCCGTTCTCG
LOC_Os10g02100
OsAffx.30238.1.S1_at--481--611Chr10:673961..673985 (25 bp)
ATGCTCCGGCGGTGAGCATCCTGTG
LOC_Os10g02100
OsAffx.30238.1.S1_at--844--8791Chr10:673898..673922 (25 bp)
TGTTCGGCGTCGTTGGGTACATCGA
LOC_Os10g02100
OsAffx.30238.1.S1_at--1162--7831Chr10:673883..673907 (25 bp)
GGTACATCGAGTTCGCGTACGAGCA
LOC_Os10g02100
OsAffx.30238.1.S1_at--6--1831Chr10:673850..673874 (25 bp)
ACGCCATGAGGAGCTTGTGCCAGGC
LOC_Os10g02100
OsAffx.30238.1.S1_at--444--851Chr10:673736..673760 (25 bp)
ATGGCGGATGGATCCCGGAGAATCT
LOC_Os10g02100
OsAffx.30238.1.S1_at--188--4251Chr10:673722..673746 (25 bp)
CCGGAGAATCTGAACGAGGGACATC
LOC_Os10g02100
OsAffx.30238.1.S1_at--890--6131Chr10:673707..673731 (25 bp)
GAGGGACATCTCGATCGATTCTTCT
LOC_Os10g02100
OsAffx.30238.1.S1_at--1148--491Chr10:673694..673718 (25 bp)
ATCGATTCTTCTGGTTGATGGCGGC
LOC_Os10g02100
Target Sequence 
GCCGACATACGACAGGGTCCTCATGCCGGCGGTGAGCAGGCTCACCGGCGTCAAGCGCGGCCTCTCCGAGCTGCACCGCA
TCGGCGTCGGAATGGTCTTCGCCGTTCTCGCGCTCGCCGCCGCCGCGGCCGTTGAGACGGCGCGCCTCCGCAGCGTGGAG
GCGGATGCTCCGGCGGTGAGCATCCTGTGGCAGGCGCCGCAGTACGTGCTCGTCGGGGTGGCGAAGGTGTTCGGCGTCGT
TGGGTACATCGAGTTCGCGTACGAGCAGAGCCCCGACGCCATGAGGAGCTTGTGCCAGGCGTGCTCGCTCATCATGGTCA
CCCCCGGGAGCTACCTCCTCTCCGCCATGCTCACCATCATCAGCTCCGTCACCGGCGGCGGCGGCGGCCATGGCGGATGG
ATCCCGGAGAATCTGAACGAGGGACATCTCGATCGATTCTTCTGGTTGATGGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30238.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis