Browse Element(s) Details


OsAffx.30237.1.S1_x_at

Description tigr:9638.m00111
TID=OsAffx.30237.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=POT family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0208011/11POT family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02040Os.11565.1.S1_at11/1110+639761..643042Peroxidase 53 precursor, putative, expressed
LOC_Os10g02050NANA10+647765..648052hypothetical protein
LOC_Os10g02060OsAffx.27688.1.S1_at1/1110+660396..660691NA
LOC_Os10g02070Os.158.1.S1_at11/1110+661285..663015Peroxidase N precursor, putative, expressed
LOC_Os10g02080OsAffx.30237.1.S1_x_at11/1110+664246..667474POT family protein
LOC_Os10g02080OsAffx.30237.2.S1_x_at2/1110+664246..667474POT family protein
LOC_Os10g02080Os.46546.2.S1_x_at1/1110+664246..667474POT family protein
LOC_Os10g02090OsAffx.22608.2.S1_at11/1110+669635..671524retrotransposon protein, putative, LINE subclass
LOC_Os10g02090OsAffx.22608.3.S1_at4/1110+669635..671524retrotransposon protein, putative, LINE subclass
LOC_Os10g02090OsAffx.22608.3.S1_x_at2/1110+669635..671524retrotransposon protein, putative, LINE subclass
LOC_Os10g02090OsAffx.5724.1.S1_x_at1/1110+669635..671524retrotransposon protein, putative, LINE subclass
LOC_Os10g02100OsAffx.30238.1.S1_at11/1110+673621..675994POT family protein, expressed
LOC_Os10g02110OsAffx.6552.1.S1_at9/1110+679328..679890hypothetical protein
LOC_Os10g02120Os.46012.3.S1_x_at9/1110+683496..689374retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g02120Os.46012.2.S1_x_at8/1110+683496..689374retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g02120Os.27088.1.A1_x_at4/1110+683496..689374retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g02120Os.54691.1.S1_x_at1/1110+683496..689374retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30237.1.S1_x_at--573--491Chr10:664656..664680 (25 bp)
ATCGGCGCCGGCATGGCGCTATCCG
LOC_Os10g02080
OsAffx.30237.1.S1_x_at--342--1791Chr10:664608..664632 (25 bp)
ACCGTCGAGGGCAGGCGACTGGCGG
LOC_Os10g02080
OsAffx.30237.1.S1_x_at--859--531Chr10:664566..664590 (25 bp)
ATCGCGTGGCAGGTGCCGCAATACG
LOC_Os10g02080
OsAffx.30237.1.S1_x_at--103--1051Chr10:664556..664580 (25 bp)
AGGTGCCGCAATACGTGCTGCTCGG
LOC_Os10g02080
OsAffx.30237.1.S1_x_at--638--3971Chr10:664523..664547 (25 bp)
CGGTGTTGGCCCACATCGGGCAGCT
LOC_Os10g02080
OsAffx.30237.1.S1_x_at--1018--2631Chr10:664485..664509 (25 bp)
AACCAGGCGCCGGACTCCATGAGGA
LOC_Os10g02080
OsAffx.30237.1.S1_x_at--177--5731Chr10:664473..664497 (25 bp)
GACTCCATGAGGAGCCTCTGCTCGG
LOC_Os10g02080
OsAffx.30237.1.S1_x_at--1027--9451Chr10:664452..664476 (25 bp)
TCGGCGCTCGGCCACATGACGTGCT
LOC_Os10g02080
OsAffx.30237.1.S1_x_at--49--8951Chr10:664436..664460 (25 bp)
TGACGTGCTCGCTCGGCAGCTACCT
LOC_Os10g02080
OsAffx.30237.1.S1_x_at--209--9671Chr10:664292..664316 (25 bp)
TCAGCTCGATCAACCTCGTCGTGTT
LOC_Os10g02080
OsAffx.30237.1.S1_x_at--501--9411Chr10:664277..664301 (25 bp)
TCGTCGTGTTCATCTGCTGCGCAAA
LOC_Os10g02080
Target Sequence 
ATCGGCGCCGGCATGGCGCTATCCGTCGCCGCCATGGCCGCCGCGGCGACCGTCGAGGGCAGGCGACTGGCGGCCGCCGG
CGAGGTGAGCATCGCGTGGCAGGTGCCGCAATACGTGCTGCTCGGCGCCAGCGCGGTGTTGGCCCACATCGGGCAGCTGG
AGTTCTTCTACAACCAGGCGCCGGACTCCATGAGGAGCCTCTGCTCGGCGCTCGGCCACATGACGTGCTCGCTCGGCAGC
TACCTCAGCTCCGTCGTCGTCACCGTCGTGTCCCATGCCACCGCGAGGGGCGGCTCGCCGGGGTGGATCGCCGACGACAT
CGACGACGGCCACCTCGACCGCTTCTTCTGGCTCGTCGCCGGCCTCAGCTCGATCAACCTCGTCGTGTTCATCTGCTGCG
CAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30237.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis