Browse Element(s) Details


OsAffx.22679.1.S1_x_at

Description tigr:9631.m03873
TID=OsAffx.22679.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative chromosome condensation regulator
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4026011/11regulator of chromosome condensation, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g40194OsAffx.13260.2.S1_at11/113+22295982..22305019DSBA-like thioredoxin domain containing protein, expressed
LOC_Os03g40194OsAffx.13260.1.S1_s_at11/113+22295982..22305019DSBA-like thioredoxin domain containing protein, expressed
LOC_Os03g40194Os.10592.1.S1_at7/113+22295982..22305019DSBA-like thioredoxin domain containing protein, expressed
LOC_Os03g40194Os.8905.1.S1_at2/113+22295982..22305019DSBA-like thioredoxin domain containing protein, expressed
LOC_Os03g40210OsAffx.25447.1.S1_at10/113+22307265..22309410hypothetical protein
LOC_Os03g40220OsAffx.10237.1.S1_at1/113+22312331..22314326transposon protein, putative, unclassified
LOC_Os03g40220OsAffx.16318.1.S1_x_at1/113+22312331..22314326transposon protein, putative, unclassified
LOC_Os03g40230OsAffx.25448.1.S1_at11/113+22315656..22316323hypothetical protein
LOC_Os03g40240NANA3+22320341..22321433hypothetical protein
LOC_Os03g40250Os.29772.3.S1_x_at11/113+22323928..22325844Leucine Rich Repeat family protein, expressed
LOC_Os03g40250Os.29772.1.S1_at10/113+22323928..22325844Leucine Rich Repeat family protein, expressed
LOC_Os03g40260Os.52337.1.S1_at11/113+22328243..22334802regulator of chromosome condensation, putative, expressed
LOC_Os03g40260OsAffx.22679.1.S1_x_at11/113+22328243..22334802regulator of chromosome condensation, putative, expressed
LOC_Os03g40270Os.5039.1.S1_at11/113+22335957..22338542Alpha-1,4-glucan-protein synthase, putative, expressed
LOC_Os03g40290OsAffx.10447.1.S1_at11/113+22354481..22355203hypothetical protein
LOC_Os03g40300OsAffx.13262.1.S1_at11/113+22357044..22357773hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003682molecular_functionchromatin binding
GO:0005488molecular_functionbinding
GO:0008536molecular_functionRan GTPase binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22679.1.S1_x_at--395--7791Chr03:22333508..22333532 (25 bp)
GGTCCACTCTTGTGCTGTAACTGAA
LOC_Os03g40260
OsAffx.22679.1.S1_x_at--918--8131Chr03:22333569..22333593 (25 bp)
GGACAACTGGGCCTAGGACCTCAGA
LOC_Os03g40260
OsAffx.22679.1.S1_x_at--847--5831Chr03:22333585..22333609 (25 bp)
GACCTCAGAGCGGTTTCTTTTCTTG
LOC_Os03g40260
OsAffx.22679.1.S1_x_at--571--2971Chr03:22333617..22333641 (25 bp)
AATGGATCTGATATGCTTCTTCGCA
LOC_Os03g40260
OsAffx.22679.1.S1_x_at--254--7132Chr03:22333656..22333680 (25 bp)
GTCATACCATCAGGAGTTCAGCTTG
LOC_Os03g40260
OsAffx.22679.1.S1_x_at--419--1551Chr03:22333675..22333699 (25 bp)
AGCTTGTTACTTGTGGTCATTCTCA
LOC_Os03g40260
OsAffx.22679.1.S1_x_at--1122--2251Chr03:22333773..22333797 (25 bp)
AAATCTACTTATGCTTGGTTCCCCT
LOC_Os03g40260
OsAffx.22679.1.S1_x_at--352--1411Chr03:22333955..22333979 (25 bp)
AGACTTGCTGCAGGTGGTGGCCATT
LOC_Os03g40260
OsAffx.22679.1.S1_x_at--201--8631Chr03:22333969..22333993 (25 bp)
TGGTGGCCATTCAGCTGTTTTAACT
LOC_Os03g40260
OsAffx.22679.1.S1_x_at--837--2111Chr03:22334046..22334070 (25 bp)
ACATGTCCAATGCTCTTCTAATAGA
LOC_Os03g40260
OsAffx.22679.1.S1_x_at--787--591Chr03:22334097..22334121 (25 bp)
ATGCCTTGGCACGTCTGTGTGAGAA
LOC_Os03g40260
Target Sequence 
GGTCCACTCTTGTGCTGTAACTGAAGATGGAGCCCTTTATGCTTGGGGTGGAGGACATGTGGGACAACTGGGCCTAGGAC
CTCAGAGCGGTTTCTTTTCTTGTGCTCTTAATGGATCTGATATGCTTCTTCGCAACATTCCAGTCCTGGTCATACCATCA
GGAGTTCAGCTTGTTACTTGTGGTCATTCTCACACCCTTGTATCTATGAAAGACAGCCGCATATATGGTTGGGGCTATAA
TAGTTATGGCCAAGCCGCTAATGAAAAATCTACTTATGCTTGGTTCCCCTCTCCAGTTGATTGGTGTGTTGGAGAGGTAA
GGAGACTTGCTGCAGGTGGTGGCCATTCAGCTGTTTTAACTGATGCATGTTCTCTAAAAGAACTGTGTGAGTTCAAGCTA
GCAGAGACAGTTAACATGTCCAATGCTCTTCTAATAGAAGATGTTGCATCGCGGACTGGTGGTGATGCCTTGGCACGTCT
GTGTGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22679.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis