Browse Element(s) Details


OsAffx.22782.2.S1_at

Description tigr:9629.m00458
TID=OsAffx.22782.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0535010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05320OsAffx.19542.3.S1_x_at7/111+2501190..2507505retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g05320OsAffx.9949.1.S1_at1/111+2501190..2507505retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g05320OsAffx.21754.1.S1_x_at1/111+2501190..2507505retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g05330OsAffx.23028.1.S1_at11/111+2511480..2512484expressed protein
LOC_Os01g05340OsAffx.1939.1.S1_at11/111+2517186..2518912hypothetical protein
LOC_Os01g05340OsAffx.30396.1.S1_x_at1/111+2517186..2518912hypothetical protein
LOC_Os01g05340OsAffx.30396.1.S1_at1/111+2517186..2518912hypothetical protein
LOC_Os01g05350OsAffx.22782.2.S1_at10/111+2526191..2529277hypothetical protein
LOC_Os01g05350Os.18362.1.S1_at1/111+2526191..2529277hypothetical protein
LOC_Os01g05350Os.56255.1.S1_x_at1/111+2526191..2529277hypothetical protein
LOC_Os01g05350Os.56255.1.S1_at1/111+2526191..2529277hypothetical protein
LOC_Os01g05350OsAffx.23361.2.S1_x_at1/111+2526191..2529277hypothetical protein
LOC_Os01g05360OsAffx.1940.1.S1_at11/111+2532102..2532482hypothetical protein
LOC_Os01g05370NANA1+2532627..2537565retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g05380Os.51592.1.S1_at10/111+2538815..2539230hypothetical protein
LOC_Os01g05390OsAffx.10916.1.S1_at11/111+2544717..2545100hypothetical protein
LOC_Os01g05400OsAffx.10917.1.S1_at11/111+2547748..2548923hypothetical protein
LOC_Os01g05410OsAffx.22782.1.S1_x_at11/111+2550422..2550823hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22782.2.S1_at--400--3731Chr01:2526582..2526606 (25 bp)
CTAAAGGACATGTTCGCCTGCGAAA
LOC_Os01g05350
OsAffx.22782.2.S1_at--412--4471Chr01:2526597..2526621 (25 bp)
GCCTGCGAAAATAAGACACCCACAT
LOC_Os01g05350
OsAffx.22782.2.S1_at--945--6191Chr01:2526639..2526663 (25 bp)
GAGGCATTCTATAATAATTCCCAGG
LOC_Os01g05350
OsAffx.22782.2.S1_at--920--91Chr01:2527803..2527822 (20 bp)
ATTCCCAGGTCGGTAGAGACAATCT
LOC_Os01g05350
OsAffx.22782.2.S1_at--379--5591Chr01:2527815..2527839 (25 bp)
GACAATCTGGAGATGCTGCAGCAGG
LOC_Os01g05350
OsAffx.22782.2.S1_at--39--5071Chr01:2527832..2527856 (25 bp)
GCAGCAGGTCGGTAGCTACAGTCTT
LOC_Os01g05350
OsAffx.22782.2.S1_at--675--1571Chr01:2527845..2527869 (25 bp)
AGCTACAGTCTTGAGATCGGCGCCG
LOC_Os01g05350
OsAffx.22782.2.S1_at--1143--6091Chr01:2527882..2527906 (25 bp)
GAGTCGCTGGCGAAGAGTACCGCTC
LOC_Os01g05350
OsAffx.22782.2.S1_at--928--851Chr01:2527971..2527995 (25 bp)
ATGGCTGCAGGTACGCTTGTTTACA
LOC_Os01g05350
OsAffx.22782.2.S1_at--985--9851NONE
TACACCGTCCTGTTTCACTCATGGA
NONE
OsAffx.22782.2.S1_at--773--5591Chr01:2529207..2529231 (25 bp)
GAAATATCTCCCTAACTAGCTTGGA
LOC_Os01g05350
Target Sequence 
CTAAAGGACATGTTCGCCTGCGAAAATAAGACACCCACATCAAGAAAAATGCTTAGTGAGGCATTCTATAATAATTCCCA
GGTCGGTAGAGACAATCTGGAGATGCTGCAGCAGGTCGGTAGCTACAGTCTTGAGATCGGCGCCGCCGAAGCCGCCGGAG
TCGCTGGCGAAGAGTACCGCTCCGGCACGCCGCCGCCGGGGCAGTTCGTGAAGGAGCTCTTGGGAGTGGGCTCCCTCACC
CTCGCCATGGCTGCAGGTACGCTTGTTTACAAGCCACCTCATGGCCTTCTCTTCCAGCGCCACGTGCTTGCCTACTACCT
CACGCTCGTGGGGATCTTCCTCGCCGGAGTGGCGGAGGTCTGGACGGCGTTCTGGTTGTCCGAAGCGGCCGGTGACGGCC
GCCGCCGCCGTCGCCGCGCGTTGGGGAGGGCCGTGCTCTGGGCCTCCGTCGTGCCGCTCGCTGCCATCGCCGGGATCGGC
GGCTACACCGTCCTGTTTCACTCATGGAACCGAAGAAATATCTCCCTAACTAGCTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22782.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis