Browse Element(s) Details


OsAffx.22789.2.A1_at

Description tigr:9629.m00394
TID=OsAffx.22789.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0474010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04710Os.739.1.S1_at11/111+2117207..2119122Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g04720Os.742.1.S1_x_at11/111+2127815..2134096leucine-rich repeat protein, putative, expressed
LOC_Os01g04730Os.45407.1.S1_s_at11/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04730Os.26422.1.S1_x_at11/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04730Os.26422.1.S1_s_at11/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04730OsAffx.10909.1.S1_at10/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04730Os.45407.1.S1_x_at5/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04740OsAffx.22789.2.A1_at10/111+2137667..2138893hypothetical protein
LOC_Os01g04750Os.45405.1.A1_at11/111+2151128..2152796DNA-binding protein RAV1, putative, expressed
LOC_Os01g04760OsAffx.23115.1.S1_at11/111+2159525..2159773hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22789.2.A1_at--200--7091Chr01:2138810..2138834 (25 bp)
GTCAACTTTAATTCCCTCGAACATG
LOC_Os01g04740
OsAffx.22789.2.A1_at--930--91Chr01:2138800..2138824 (25 bp)
ATTCCCTCGAACATGTGCGATTTGT
LOC_Os01g04740
OsAffx.22789.2.A1_at--644--2111Chr01:2138790..2138814 (25 bp)
ACATGTGCGATTTGTATCAATCTAG
LOC_Os01g04740
OsAffx.22789.2.A1_at--423--3891Chr01:2138751..2138775 (25 bp)
CGGAAATTTCCGAGATATCTAGTTA
LOC_Os01g04740
OsAffx.22789.2.A1_at--359--10151Chr01:2138740..2138760 (21 bp)
TATCTAGTTATCGTTTCCGGTCTAC
LOC_Os01g04740
OsAffx.22789.2.A1_at--312--9271NONE
TCCGGTCTACTATTTCGATTCCGTT
NONE
OsAffx.22789.2.A1_at--163--7231Chr01:2137786..2137810 (25 bp)
GTCGACGAGAACACATCAAGACCGA
LOC_Os01g04740
OsAffx.22789.2.A1_at--427--9711Chr01:2137771..2137795 (25 bp)
TCAAGACCGACCCTTCCAAAGTGGA
LOC_Os01g04740
OsAffx.22789.2.A1_at--194--9211Chr01:2137757..2137781 (25 bp)
TCCAAAGTGGAAGCTCATCAGGAGC
LOC_Os01g04740
OsAffx.22789.2.A1_at--1116--1571Chr01:2137746..2137770 (25 bp)
AGCTCATCAGGAGCGGCATTGACAA
LOC_Os01g04740
OsAffx.22789.2.A1_at--788--4191Chr01:2137709..2137733 (25 bp)
CCCGATGTCAAGCTGCATCGACAAG
LOC_Os01g04740
Target Sequence 
GTCAACTTTAATTCCCTCGAACATGTGCGATTTGTATCAATCTAGGGGTGAAAAATATACGGAAATTTCCGAGATATCTA
GTTATCGTTTCCGGTCTACTATTTCGATTCCGTTTTCGAGAAAAAAATATGCAAATGAAAATGGTAGAGGGTCGGAGTTG
GCGGCGACAAAGGTCGACGTCGACGAGAACACATCAAGACCGACCCTTCCAAAGTGGAAGCTCATCAGGAGCGGCATTGA
CAACCTCCCAGCTCCCCCGATGTCAAGCTGCATCGACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22789.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis