Browse Element(s) Details


OsAffx.22850.1.S1_at

Description gb:NM_183945.1
DB_XREF= gi:34895017
GEN=OJ1111_G12.17
TID=OsAffx.22850.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1111_G12.17 (OJ1111_G12.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g253001/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25250NANA5+14581551..14581949hypothetical protein
LOC_Os05g25260Os.56944.1.S1_at11/115+14584695..14586586AP2 domain containing protein, expressed
LOC_Os05g25270OsAffx.14822.1.S1_at11/115+14589504..14590776hypothetical protein
LOC_Os05g25280OsAffx.31069.1.S1_x_at1/115+14596637..14599484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g25290NANA5+14600556..14603169transposon protein, putative, unclassified
LOC_Os05g25300OsAffx.22850.1.S1_x_at2/115+14603422..14608807retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g25300OsAffx.10596.1.S1_x_at1/115+14603422..14608807retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g25300OsAffx.25260.1.S1_at1/115+14603422..14608807retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g25300OsAffx.22850.1.S1_at1/115+14603422..14608807retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g25310Os.7310.1.S1_at11/115+14610167..14623239AMP-binding enzyme family protein, expressed
LOC_Os05g25320Os.50190.1.S1_at10/115+14624020..14626949transposon protein, putative, unclassified, expressed
LOC_Os05g25330NANA5+14629613..14634041retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22850.1.S1_at--1157--3931Chr01:13466552..13466576 (25 bp)
CGGCTGGGATTTGCATCGGCTGAGA
NONE
OsAffx.22850.1.S1_at--280--8552Chr02:5582201..5582390 (25 bp)
TGGAGCACACAGAGGACAGCCGATA
NONE
OsAffx.22850.1.S1_at--129--5953Chr02:5582203..5582392 (25 bp)
GAGCACACAGAGGACAGCCGATACA
NONE
OsAffx.22850.1.S1_at--174--21913Chr08:8036970..8036992 (23 bp)
ACACAGAGGACAGCCGATACAGCCG
NONE
OsAffx.22850.1.S1_at--407--6471Chr01:13466506..13466530 (25 bp)
GATACAGCCGATTCTGTTAAGGACA
NONE
OsAffx.22850.1.S1_at--545--2151Chr01:13466503..13466527 (25 bp)
ACAGCCGATTCTGTTAAGGACAGTT
NONE
OsAffx.22850.1.S1_at--440--4491Chr01:13466500..13466524 (25 bp)
GCCGATTCTGTTAAGGACAGTTGTA
NONE
OsAffx.22850.1.S1_at--521--8137Chr09:3706066..3706089 (24 bp)
GGACAGTTGTAAAACTGCTTCTAGA
NONE
OsAffx.22850.1.S1_at--1106--6635Chr09:3706070..3706094 (25 bp)
GTTGTAAAACTGCTTCTAGAATCGA
NONE
OsAffx.22850.1.S1_at--377--7052Chr07:18949217..18949236 (20 bp)
GTAAAACTGCTTCTAGAATCGATGA
NONE
OsAffx.22850.1.S1_at--644--2551Chr01:13466474..13466498 (25 bp)
AACTGCTTCTAGAATCGATGAACGT
NONE
Target Sequence 
CGGCTGGGATTTGCATCGGCTGAGATGGAGCACACAGAGGACAGCCGATACAGCCGATTCTGTTAAGGACAGTTGTAAAA
CTGCTTCTAGAATCGATGAACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22850.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis