Browse Element(s) Details


OsAffx.22886.1.S1_at

Description tigr:9629.m02078
TID=OsAffx.22886.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2171011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21670Os.34727.1.S1_at11/111+12139940..12144249expressed protein
LOC_Os01g21680OsAffx.9256.1.S1_at11/111+12146251..12146561hypothetical protein
LOC_Os01g21690Os.47004.1.S1_at1/111+12149214..12152896retrotransposon protein, putative, unclassified
LOC_Os01g21700OsAffx.23331.2.S1_x_at3/111+12158638..12159207hypothetical protein
LOC_Os01g21700OsAffx.23331.2.S1_at2/111+12158638..12159207hypothetical protein
LOC_Os01g21710OsAffx.22886.1.S1_at11/111+12167338..12169308hypothetical protein
LOC_Os01g21720NANA1+12170431..12171824retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g21730OsAffx.20313.1.S1_x_at4/111+12180719..12181485hypothetical protein
LOC_Os01g21740OsAffx.2052.1.S1_at11/111+12186014..12186478hypothetical protein
LOC_Os01g21750NANA1+12188028..12188369hypothetical protein
LOC_Os01g21760OsAffx.10689.1.S1_at11/111+12192066..12193294hypothetical protein
LOC_Os01g21760OsAffx.31174.4.S1_x_at1/111+12192066..12193294hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22886.1.S1_at--1105--3251Chr01:12168369..12168393 (25 bp)
CAACGGCAAGTATCTGACCAGCTAT
LOC_Os01g21710
OsAffx.22886.1.S1_at--359--1571Chr01:12168388..12168412 (25 bp)
AGCTATGCGGTCTTCATGGCTTACC
LOC_Os01g21710
OsAffx.22886.1.S1_at--111--10471Chr01:12168408..12168432 (25 bp)
TTACCTCATCAACACTGCTCAAGAT
LOC_Os01g21710
OsAffx.22886.1.S1_at--692--9271Chr01:12168440..12168464 (25 bp)
TCCTGCAGCGCTACGATGTCATCGA
LOC_Os01g21710
OsAffx.22886.1.S1_at--414--1551Chr01:12168509..12168533 (25 bp)
AGCTTCATGCCTGTTCCTACATTAA
LOC_Os01g21710
OsAffx.22886.1.S1_at--663--2531Chr01:12168532..12168556 (25 bp)
AACTATGACGAGCATTACCTGGCCC
LOC_Os01g21710
OsAffx.22886.1.S1_at--666--8411Chr01:12168552..12168576 (25 bp)
GGCCCCTGTGTTCAGAGACATCAAT
LOC_Os01g21710
OsAffx.22886.1.S1_at--1035--8051Chr01:12168605..12168629 (25 bp)
GGAGAGCCAGGCTATGCCACGACTA
LOC_Os01g21710
OsAffx.22886.1.S1_at--338--791Chr01:12168642..12168666 (25 bp)
ATGGGCAGTTATCTCGTTCTTGGCA
LOC_Os01g21710
OsAffx.22886.1.S1_at--407--5111Chr01:12168667..12168691 (25 bp)
GCACTGATCTTTATGGGCTTCTCAA
LOC_Os01g21710
OsAffx.22886.1.S1_at--944--5731Chr01:12168938..12169157 (25 bp)
GACTGGTGGTGTATCTTGATGCCTT
LOC_Os01g21710
Target Sequence 
CAACGGCAAGTATCTGACCAGCTATGCGGTCTTCATGGCTTACCTCATCAACACTGCTCAAGATGCTATCCTCCTGCAGC
GCTACGATGTCATCGACAACAAGCTAGCAAATGAGGAGGAGGCCGCCAAGTTCTTCAGCCAGCTTCATGCCTGTTCCTAC
ATTAACTATGACGAGCATTACCTGGCCCCTGTGTTCAGAGACATCAATACATATTGCCGGCGATGGTGGCCCAAGCGGAG
AGCCAGGCTATGCCACGACTACTTCGCCAGCCCATGGGCAGTTATCTCGTTCTTGGCAGCACTGATCTTTATGGGCTTCT
CAATCTTTAAGATAGTCGTCATGATTTTGAGTGTCTTCTTTCATTTCCACGAAAGAAANNGNACCATGAAATGGGTGTCA
AACAGACTGGTGGTGTATCTTGATGCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22886.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis