Browse Element(s) Details


OsAffx.22904.1.S1_at

Description tigr:9629.m01993
TID=OsAffx.22904.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2092011/11expressed protein
LOC_Os03g149201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g20890OsAffx.11133.1.S1_at11/111+11645388..11646793hypothetical protein
LOC_Os01g20894Os.56979.1.S1_at11/111+11649742..11650182expressed protein
LOC_Os01g20894Os.56979.1.S1_x_at10/111+11649742..11650182expressed protein
LOC_Os01g20900OsAffx.11132.1.S1_x_at11/111+11659964..11664325Protein kinase domain containing protein, expressed
LOC_Os01g20900Os.36147.2.S1_x_at11/111+11659964..11664325Protein kinase domain containing protein, expressed
LOC_Os01g20900Os.36147.1.S1_at10/111+11659964..11664325Protein kinase domain containing protein, expressed
LOC_Os01g20900OsAffx.11132.1.S1_at8/111+11659964..11664325Protein kinase domain containing protein, expressed
LOC_Os01g20910Os.45749.1.A1_at11/111+11668923..11669866Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g20920OsAffx.22904.1.S1_x_at11/111+11670469..11670831expressed protein
LOC_Os01g20920OsAffx.22904.1.S1_at11/111+11670469..11670831expressed protein
LOC_Os01g20930Os.45747.1.S1_x_at11/111+11671382..11673456Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g20940Os.13500.2.S1_x_at11/111+11676292..11682491dual specificity protein phosphatase family protein, putative, expressed
LOC_Os01g20940Os.13500.1.S1_at10/111+11676292..11682491dual specificity protein phosphatase family protein, putative, expressed
LOC_Os01g20950Os.32222.1.S1_at11/111+11685728..11687134Sulfotransferase domain containing protein, expressed
LOC_Os01g20960OsAffx.11135.1.S1_at10/111+11693383..11693664hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22904.1.S1_at--1088--911Chr01:11670666..11670690 (25 bp)
AGGCAGAGCTGGCTGGTTACTAGGA
LOC_Os01g20920
OsAffx.22904.1.S1_at--227--1631Chr01:11670672..11670696 (25 bp)
AGCTGGCTGGTTACTAGGAGGACGC
LOC_Os01g20920
OsAffx.22904.1.S1_at--679--8331Chr01:11670676..11670700 (25 bp)
GGCTGGTTACTAGGAGGACGCGGGA
LOC_Os01g20920
OsAffx.22904.1.S1_at--955--952Chr01:11670690..11670714 (25 bp)
AGGACGCGGGAGCTCAGGTCCCTCG
LOC_Os01g20920
OsAffx.22904.1.S1_at--372--7572Chr01:11670725..11670749 (25 bp)
GGGCGCTCCAGCTCTATCTGTTTGG
LOC_Os01g20920
OsAffx.22904.1.S1_at--748--8392Chr01:11670726..11670750 (25 bp)
GGCGCTCCAGCTCTATCTGTTTGGC
LOC_Os01g20920
OsAffx.22904.1.S1_at--921--4771Chr01:11670729..11670753 (25 bp)
GCTCCAGCTCTATCTGTTTGGCCAC
LOC_Os01g20920
OsAffx.22904.1.S1_at--629--9211Chr01:11670731..11670755 (25 bp)
TCCAGCTCTATCTGTTTGGCCACGT
LOC_Os01g20920
OsAffx.22904.1.S1_at--126--1591Chr01:11670734..11670758 (25 bp)
AGCTCTATCTGTTTGGCCACGTCGG
LOC_Os01g20920
OsAffx.22904.1.S1_at--802--3751Chr01:11670736..11670760 (25 bp)
CTCTATCTGTTTGGCCACGTCGGGA
LOC_Os01g20920
OsAffx.22904.1.S1_at--738--451Chr01:11670740..11670764 (25 bp)
ATCTGTTTGGCCACGTCGGGAAGGG
LOC_Os01g20920
Target Sequence 
AGGCAGAGCTGGCTGGTTACTAGGAGGACGCGGGAGCTCAGGTCCCTCGGCGGCGGCGCGGGCGCTCCAGCTCTATCTGT
TTGGCCACGTCGGGAAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22904.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis