Browse Element(s) Details


OsAffx.22929.2.S1_x_at

Description tigr:9629.m01813
TID=OsAffx.22929.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1865011/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18600OsAffx.23292.1.S1_at11/111+10474910..10475766expressed protein
LOC_Os01g18610NANA1+10477649..10480295retrotransposon protein, putative, LINE subclass
LOC_Os01g18620OsAffx.23293.2.S1_x_at11/111+10485726..10487772Transferase family protein
LOC_Os01g18620Os.12235.2.S1_x_at3/111+10485726..10487772Transferase family protein
LOC_Os01g18630Os.48522.1.A1_s_at11/111+10488817..10492460Aspartic proteinase precursor, putative, expressed
LOC_Os01g18630Os.3623.1.S1_at9/111+10488817..10492460Aspartic proteinase precursor, putative, expressed
LOC_Os01g18640Os.2675.2.A1_at11/111+10493480..10497721epimerase, putative, expressed
LOC_Os01g18650OsAffx.22929.2.S1_x_at11/111+10498397..10500970hAT family dimerisation domain containing protein
LOC_Os01g18660Os.3625.1.S1_at11/111+10505810..10510170Isopenicillin N epimerase, putative, expressed
LOC_Os01g18670Os.20120.1.S1_at6/111+10512501..10518060CjMDR1, putative, expressed
LOC_Os01g18670OsAffx.21918.1.S1_x_at1/111+10512501..10518060CjMDR1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22929.2.S1_x_at--987--7391Chr01:10499035..10499059 (25 bp)
GTGTTTTGCACAGATTTTTGACCCA
LOC_Os01g18650
OsAffx.22929.2.S1_x_at--104--2631Chr01:10498897..10498921 (25 bp)
AACCTCAGCCTCAGTTGATACAACC
LOC_Os01g18650
OsAffx.22929.2.S1_x_at--553--6471Chr01:10498881..10498905 (25 bp)
GATACAACCAGCTCAATGGCTTCTA
LOC_Os01g18650
OsAffx.22929.2.S1_x_at--538--851Chr01:10498866..10498890 (25 bp)
ATGGCTTCTATTGCAAGTGATTTCC
LOC_Os01g18650
OsAffx.22929.2.S1_x_at--1127--1091Chr01:10498851..10498875 (25 bp)
AGTGATTTCCAGTCATTTTTGCAAT
LOC_Os01g18650
OsAffx.22929.2.S1_x_at--404--10691Chr01:10498709..10498733 (25 bp)
TTCCAGTTGTGTCTAGCTTGGCAAA
LOC_Os01g18650
OsAffx.22929.2.S1_x_at--955--6131Chr01:10498684..10498708 (25 bp)
GAGGTTCTTGACTGTTCCAGTGAGC
LOC_Os01g18650
OsAffx.22929.2.S1_x_at--361--3451Chr01:10498636..10498660 (25 bp)
CAGTACTGCAGGTCGAGTTCTTGAT
LOC_Os01g18650
OsAffx.22929.2.S1_x_at--23--5411Chr01:10498604..10498628 (25 bp)
GAAGCTCTTTAAAGCCAGCCACAGT
LOC_Os01g18650
OsAffx.22929.2.S1_x_at--112--8971Chr01:10498534..10498558 (25 bp)
TGACAACAATCATCCTCTTCTTGTG
LOC_Os01g18650
OsAffx.22929.2.S1_x_at--468--571Chr01:10498452..10498547 (25 bp)
ATCCTCTTCTTGTGATTGGAGATGG
LOC_Os01g18650
Target Sequence 
GTGTTTTGCACAGATTTTTGACCCAATTAGGTGTGAAATTGAGATTAATGACATCAACCAAGAGTTGGAAAGACTCTATA
ACAAGTATGAGATATTACATCGGCAAAAGATGGGTGAAAATGGCACGAACAGGCAATCAACCTCAGCCTCAGTTGATACA
ACCAGCTCAATGGCTTCTATTGCAAGTGATTTCCAGTCATTTTTGCAATCTACTGTTACAGAAAGTTCAAAATCTGAGCT
GCTGATTTATCTAGATGAAGCAAATGAGGCCATAGATAACAAGCATTTCAACTTACTCAGATATTGGAATGTGAACTGTC
ATAGATTTCCAGTTGTGTCTAGCTTGGCAAAGAGGTTCTTGACTGTTCCAGTGAGCAGTGTATCATCAGAGTGTACATTC
AGTACTGCAGGTCGAGTTCTTGATGACTACAGAAGCTCTTTAAAGCCAGCCACAGTTCAGGCATTAGTATGTGCATCTAG
CTGGATAAGGGGCCCTTATGATGACAACAATCATCCTCTTCTTGTGATTGGAGATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22929.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis