Browse Element(s) Details


OsAffx.23030.1.S1_s_at

Description gb:AK102437.1
DB_XREF= gi:32987646
TID=OsAffx.23030.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033093K01, full insert sequence.
FL= gb:AK102437.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g032101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03160OsAffx.16062.1.S1_at11/117+1226821..1236455Phospholipase A-2-activating protein, putative, expressed
LOC_Os07g03160OsAffx.16061.1.S1_at11/117+1226821..1236455Phospholipase A-2-activating protein, putative, expressed
LOC_Os07g03160Os.5896.1.S1_at11/117+1226821..1236455Phospholipase A-2-activating protein, putative, expressed
LOC_Os07g03170Os.56093.1.S1_at11/117+1238103..1238925expressed protein
LOC_Os07g03180Os.4624.1.S1_at11/117+1243744..1244547expressed protein
LOC_Os07g03190OsAffx.28242.1.S1_at11/117+1247236..1248366expressed protein
LOC_Os07g03200Os.12206.1.S1_at9/117+1253347..1253967Phytosulfokines 4 precursor, putative, expressed
LOC_Os07g03210OsAffx.28243.1.S1_at11/117+1258652..1263749hypothetical protein
LOC_Os07g03210OsAffx.22040.1.S1_x_at1/117+1258652..1263749hypothetical protein
LOC_Os07g03210OsAffx.23030.1.S1_s_at1/117+1258652..1263749hypothetical protein
LOC_Os07g03220OsAffx.28244.1.S1_at11/117+1266274..1266849bZIP transcription factor family protein, expressed
LOC_Os07g03230Os.48081.1.S1_at11/117+1272854..1277016Eukaryotic translation initiation factor 3 subunit 8, putative, expressed
LOC_Os07g03240Os.9753.1.S1_at11/117+1279706..1283371RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23030.1.S1_s_at--993--3771Chr10:4348148..4348172 (25 bp)
CTCGGTGACAGAGGAGGCCTGCCAT
NONE
OsAffx.23030.1.S1_s_at--135--8371Chr10:4348120..4348144 (25 bp)
GGCGGGCGGCGGATGTGCATGCACC
NONE
OsAffx.23030.1.S1_s_at--1075--4693Chr07:11843764..11843805 (25 bp)
GCGGCGGATCTGACAACGACGACCA
NONE
OsAffx.23030.1.S1_s_at--74--1711Chr10:4348056..4348080 (25 bp)
ACCACGACCGCGGTGACAACGACGA
NONE
OsAffx.23030.1.S1_s_at--953--3231Chr10:4348040..4348064 (25 bp)
CAACGACGACGACAAAGCTGCCGGC
NONE
OsAffx.23030.1.S1_s_at--581--2692Chr05:9371431..9371452 (22 bp)
AAGCTGCCGGCCGTGCTCGGTGACA
NONE
OsAffx.23030.1.S1_s_at--417--4191Chr10:4347936..4347960 (25 bp)
CCCTACTGTGTTTTCTTGTGTGTTC
NONE
OsAffx.23030.1.S1_s_at--192--3891Chr10:4347931..4347955 (25 bp)
CTGTGTTTTCTTGTGTGTTCTTGTT
NONE
OsAffx.23030.1.S1_s_at--1125--10371Chr10:4347926..4347950 (25 bp)
TTTTCTTGTGTGTTCTTGTTTGTAA
NONE
OsAffx.23030.1.S1_s_at--639--8672Chr11:20507629..20507653 (25 bp)
TGTGTGTTGTTAATCTGTTCTGTTG
NONE
OsAffx.23030.1.S1_s_at--664--9754Chr05:7161260..7161281 (22 bp)
TAATCTGTTCTGTTGATGATGTCAA
NONE
Target Sequence 
CTCGGTGACAGAGGAGGCCTGCCATGGCGGCGGGCGGCGGATGTGCATGCACCGCGGGGAGCACGCGGGCGGCGGCGGAT
CTGACAACGACGACCACGACCGCGGTGACAACGACGACGACAAAGCTGCCGGCCGTGCTCGGTGACAGAGGAGGCCGATG
GGCGGCGCCACAGCATAGGGGAAGCGGCGGCGGCAGCACTGCCCTCCCCTCCCCCTACTGTGTTTTCTTGTGTGTTCTTG
TTTGTAAAGATGTTTATTAGGATATGTGTGTTGTTAATCTGTTCTGTTGATGATGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23030.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis