Browse Element(s) Details


OsAffx.23104.1.S1_at

Description tigr:9629.m00307
TID=OsAffx.23104.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0391411/11Metal tolerance protein C3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03890OsAffx.22801.1.S1_at11/111+1654178..1655190seed specific protein Bn15D17A, putative
LOC_Os01g03900Os.31056.1.S1_at9/111+1667277..1667775expressed protein
LOC_Os01g03914Os.11240.1.S1_at11/111+1669833..1677251Metal tolerance protein C3, putative, expressed
LOC_Os01g03914OsAffx.23104.1.S1_at11/111+1669833..1677251Metal tolerance protein C3, putative, expressed
LOC_Os01g03914Os.54615.1.S1_at1/111+1669833..1677251Metal tolerance protein C3, putative, expressed
LOC_Os01g03930OsAffx.1923.1.S1_at11/111+1678212..1678615hypothetical protein
LOC_Os01g03940OsAffx.10898.1.S1_x_at7/111+1681543..1682682expressed protein
LOC_Os01g03940OsAffx.10898.1.S1_at5/111+1681543..1682682expressed protein
LOC_Os01g03950Os.19761.1.S1_at11/111+1695005..1699892alpha-D-xylosidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0016020cellular_componentmembrane
GO:0008324molecular_functioncation transporter activity
GO:0015562molecular_functionefflux permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23104.1.S1_at--940--8331Chr01:1677104..1677128 (25 bp)
GGCTGAGCGTCAACGACTTCCAGTT
LOC_Os01g03914
OsAffx.23104.1.S1_at--253--4751Chr01:1677103..1677127 (25 bp)
GCTGAGCGTCAACGACTTCCAGTTG
LOC_Os01g03914
OsAffx.23104.1.S1_at--439--8911Chr01:1677101..1677125 (25 bp)
TGAGCGTCAACGACTTCCAGTTGCC
LOC_Os01g03914
OsAffx.23104.1.S1_at--366--4651Chr01:1677098..1677122 (25 bp)
GCGTCAACGACTTCCAGTTGCCGGA
LOC_Os01g03914
OsAffx.23104.1.S1_at--903--7071Chr01:1677096..1677120 (25 bp)
GTCAACGACTTCCAGTTGCCGGAGC
LOC_Os01g03914
OsAffx.23104.1.S1_at--317--2591Chr01:1677093..1677117 (25 bp)
AACGACTTCCAGTTGCCGGAGCGGC
LOC_Os01g03914
OsAffx.23104.1.S1_at--673--3191Chr01:1677067..1677091 (25 bp)
CAAGGACCCGCACTTCGTCAAGAGG
LOC_Os01g03914
OsAffx.23104.1.S1_at--166--951Chr01:1677065..1677089 (25 bp)
AGGACCCGCACTTCGTCAAGAGGGT
LOC_Os01g03914
OsAffx.23104.1.S1_at--299--1791Chr01:1677062..1677086 (25 bp)
ACCCGCACTTCGTCAAGAGGGTCAT
LOC_Os01g03914
OsAffx.23104.1.S1_at--284--4231Chr01:1677060..1677084 (25 bp)
CCGCACTTCGTCAAGAGGGTCATCA
LOC_Os01g03914
OsAffx.23104.1.S1_at--1098--4111Chr01:1677059..1677083 (25 bp)
CGCACTTCGTCAAGAGGGTCATCAA
LOC_Os01g03914
Target Sequence 
GGCTGAGCGTCAACGACTTCCAGTTGCCGGAGCGGCCCAAGGACCCGCACTTCGTCAAGAGGGTCATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23104.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis