Browse Element(s) Details


OsAffx.2315.1.S1_at

Description tigr:9629.m05098
TID=OsAffx.2315.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=B3 DNA binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5254011/11B3 DNA binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52500Os.421.1.S1_a_at11/111+30492864..30498505NADP-dependent malic enzyme, putative, expressed
LOC_Os01g52514OsAffx.11575.1.S1_at11/111+30500289..30505892B3 DNA binding domain containing protein, expressed
LOC_Os01g52530Os.29866.1.S1_at11/111+30507453..30511324Ribose-phosphate pyrophosphokinase 3, putative, expressed
LOC_Os01g52540OsAffx.2315.1.S1_at11/111+30513231..30516017B3 DNA binding domain containing protein
LOC_Os01g52550Os.27564.1.S1_a_at11/111+30516231..30522187P-glycoprotein homologue, putative, expressed
LOC_Os01g52560Os.35398.2.S1_x_at11/111+30540714..30549822ABC transporter family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2315.1.S1_at--91--6551Chr01:30515461..30515485 (25 bp)
GTTGTCTTAAGGATAGGGATGCTCA
LOC_Os01g52540
OsAffx.2315.1.S1_at--238--5271Chr01:30515495..30515519 (25 bp)
GAATGCGTTACTGGAACATGCTAGA
LOC_Os01g52540
OsAffx.2315.1.S1_at--998--5111Chr01:30515534..30515558 (25 bp)
GCACAATTTTAACTCGGAGATGCGG
LOC_Os01g52540
OsAffx.2315.1.S1_at--235--8191Chr01:30515557..30515581 (25 bp)
GGAAGGAAGAGTTTTCTGCAAAGCT
LOC_Os01g52540
OsAffx.2315.1.S1_at--304--2911Chr01:30515583..30515607 (25 bp)
AAGGTTCATTTGAAGTGGCAGCTCA
LOC_Os01g52540
OsAffx.2315.1.S1_at--175--1431Chr01:30515615..30515639 (25 bp)
AGAAACTATATATACCTCATTGGAG
LOC_Os01g52540
OsAffx.2315.1.S1_at--906--3111Chr01:30515670..30515694 (25 bp)
AATATTGCTTTCTCAATGCTGCATG
LOC_Os01g52540
OsAffx.2315.1.S1_at--493--6471Chr01:30515729..30515753 (25 bp)
GATAACTGGCTTGCAGCAGTCGTTG
LOC_Os01g52540
OsAffx.2315.1.S1_at--891--1411Chr01:30515776..30515800 (25 bp)
AGAAATTGGCTCATCAAGTTGCTGA
LOC_Os01g52540
OsAffx.2315.1.S1_at--756--6671Chr01:30515793..30515817 (25 bp)
GTTGCTGAGCATGAGAGTGTATTTC
LOC_Os01g52540
OsAffx.2315.1.S1_at--584--6751Chr01:30515886..30515910 (25 bp)
GTTAAAGTTCAGCTAACTTCCACTG
LOC_Os01g52540
Target Sequence 
GTTGTCTTAAGGATAGGGATGCTCAAAGGATAGTGAATGCGTTACTGGAACATGCTAGAAAAATCAAGGAGATGCACAAT
TTTAACTCGGAGATGCGGAAGGAAGAGTTTTCTGCAAAGCTGAAGGTTCATTTGAAGTGGCAGCTCAAAGAAGTAGAAAC
TATATATACCTCATTGGAGTTAGATTACAAGAAAGCAACGAGTGATGATAATATTGCTTTCTCAATGCTGCATGATAAGA
AGAAGAAATTGCACAATCTTCAGGATGAGATAACTGGCTTGCAGCAGTCGTTGGAGATGAAGAAGGATGAAATGCAGAAA
TTGGCTCATCAAGTTGCTGAGCATGAGAGTGTATTTCAGAAGTCTTTAATGGAAAGATTAAGGATTAAGGAAGTTATGAA
GGGTTATGAGCAAACTCTTGCTGAAGTTAAAGTTCAGCTAACTTCCACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2315.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis