Browse Element(s) Details


OsAffx.23160.1.S1_s_at

Description tigr:9629.m00768
TID=OsAffx.23160.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0830011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08270Os.50272.1.S1_s_at11/111+4048683..4054510aminotransferase class I and II family protein, putative, expressed
LOC_Os01g08280Os.25067.1.S1_a_at11/111+4056312..4059990expressed protein
LOC_Os01g08290Os.25067.2.S1_at7/111+4060870..4063121integral membrane family protein, putative, expressed
LOC_Os01g08300OsAffx.23160.1.S1_s_at11/111+4063149..4064121expressed protein
LOC_Os01g08300Os.51295.1.S1_at11/111+4063149..4064121expressed protein
LOC_Os01g08300Os.46584.1.S1_x_at1/111+4063149..4064121expressed protein
LOC_Os01g08310Os.55822.1.A1_at10/111+4065438..4067133Protein phosphatase 2A regulatory B subunit containing protein, expressed
LOC_Os01g08310OsAffx.10962.1.S1_x_at7/111+4065438..4067133Protein phosphatase 2A regulatory B subunit containing protein, expressed
LOC_Os01g08310OsAffx.10962.2.S1_at7/111+4065438..4067133Protein phosphatase 2A regulatory B subunit containing protein, expressed
LOC_Os01g08320Os.9069.1.S1_at11/111+4070718..4073240Auxin-induced protein 22B, putative, expressed
LOC_Os01g08330NANA1+4078118..4079482Eukaryotic aspartyl protease family protein
LOC_Os01g08340Os.54294.1.S1_at11/111+4087875..4091623zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23160.1.S1_s_at--476--4171Chr01:4063942..4063966 (25 bp)
CGCCATGAGGACAAAGGCTGCCTCT
LOC_Os01g08300
OsAffx.23160.1.S1_s_at--885--4331Chr01:4063940..4063964 (25 bp)
CCATGAGGACAAAGGCTGCCTCTAT
LOC_Os01g08300
OsAffx.23160.1.S1_s_at--530--6191Chr01:4063936..4063960 (25 bp)
GAGGACAAAGGCTGCCTCTATGCAT
LOC_Os01g08300
OsAffx.23160.1.S1_s_at--766--951Chr01:4063935..4063959 (25 bp)
AGGACAAAGGCTGCCTCTATGCATG
LOC_Os01g08300
OsAffx.23160.1.S1_s_at--187--5631Chr01:4063935..4063957 (23 bp)
GACAAAGGCTGCCTCTATGCATGCC
LOC_Os01g08300
OsAffx.23160.1.S1_s_at--458--2191Chr01:4063935..4063956 (22 bp)
ACAAAGGCTGCCTCTATGCATGCCT
LOC_Os01g08300
OsAffx.23160.1.S1_s_at--570--911Chr01:4063494..4063952 (25 bp)
AGGCTGCCTCTATGCATGCCTGTTC
LOC_Os01g08300
OsAffx.23160.1.S1_s_at--590--8331Chr01:4063493..4063951 (25 bp)
GGCTGCCTCTATGCATGCCTGTTCA
LOC_Os01g08300
OsAffx.23160.1.S1_s_at--7--4791Chr01:4063492..4063950 (25 bp)
GCTGCCTCTATGCATGCCTGTTCAC
LOC_Os01g08300
OsAffx.23160.1.S1_s_at--52--9551Chr01:4063486..4063944 (25 bp)
TCTATGCATGCCTGTTCACCCTCTG
LOC_Os01g08300
OsAffx.23160.1.S1_s_at--166--651Chr01:4063483..4063941 (25 bp)
ATGCATGCCTGTTCACCCTCTGCTG
LOC_Os01g08300
Target Sequence 
CGCCATGAGGACAAAGGCTGCCTCTATGCATGCCTGTTCACCCTCTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23160.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis