Browse Element(s) Details


OsAffx.23166.1.S1_at

Description tigr:9629.m00825
TID=OsAffx.23166.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=PHD-finger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0882011/11PHD-finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08780Os.29290.1.S1_at10/111+4399470..4404094inositol-1,4,5-trisphosphate 5-Phosphatase, putative, expressed
LOC_Os01g08790OsAffx.23165.1.S1_x_at11/111+4412218..4412934Histone-like transcription factor and archaeal histone family protein
LOC_Os01g08800OsAffx.21912.1.S1_at11/111+4414085..4415729Cytochrome P450 family protein, expressed
LOC_Os01g08810Os.28952.1.S1_at11/111+4418120..4419907Cytochrome P450 family protein, expressed
LOC_Os01g08820OsAffx.23166.1.S1_at11/111+4428540..4430481PHD-finger family protein, expressed
LOC_Os01g08830Os.9695.1.S1_at10/111+4430913..4434756F-box domain containing protein, expressed
LOC_Os01g08840NANA1+4437703..4438170hypothetical protein
LOC_Os01g08850Os.33427.1.S1_at11/111+4441472..4445170expressed protein
LOC_Os01g08860Os.519.1.S1_at11/111+4445845..444667817.5 kDa class II heat shock protein, putative, expressed
LOC_Os01g08870Os.31700.3.A1_at2/111+4450519..4450806expressed protein
LOC_Os01g08880Os.31700.4.S1_x_at1/111+4451557..4453886hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23166.1.S1_at--331--8091Chr01:4429201..4429225 (25 bp)
GGACCCCATCGTGTTCTGCGACGGG
LOC_Os01g08820
OsAffx.23166.1.S1_at--638--10591Chr01:4429188..4429212 (25 bp)
TTCTGCGACGGGTGCGACCTCATGG
LOC_Os01g08820
OsAffx.23166.1.S1_at--558--7711Chr01:4429179..4429203 (25 bp)
GGGTGCGACCTCATGGTGCACGCCT
LOC_Os01g08820
OsAffx.23166.1.S1_at--456--8611Chr01:4429166..4429190 (25 bp)
TGGTGCACGCCTCCTGCTACGGCAA
LOC_Os01g08820
OsAffx.23166.1.S1_at--415--8391Chr01:4429116..4429140 (25 bp)
GGCGACTGGTTCTGCTCCGTCTGCA
LOC_Os01g08820
OsAffx.23166.1.S1_at--214--1951Chr01:4428876..4428900 (25 bp)
ACGGCGTGCTACGTCTGCGAGAGCG
LOC_Os01g08820
OsAffx.23166.1.S1_at--1151--4131Chr01:4428821..4428845 (25 bp)
CCAGGTGCGGCCTAGGGTTCCACGT
LOC_Os01g08820
OsAffx.23166.1.S1_at--244--3931Chr01:4428778..4428802 (25 bp)
CGGCCTCTGCATCGAGTACCAGGAG
LOC_Os01g08820
OsAffx.23166.1.S1_at--904--9471Chr01:4428713..4428737 (25 bp)
TCTGCTTGGAGCACACCAAGCTCTG
LOC_Os01g08820
OsAffx.23166.1.S1_at--117--8551Chr01:4428707..4428731 (25 bp)
TGGAGCACACCAAGCTCTGGGAAAA
LOC_Os01g08820
OsAffx.23166.1.S1_at--52--7631Chr01:4428571..4428713 (25 bp)
GGGAAAAGCAACAATTGACAGGCAA
LOC_Os01g08820
Target Sequence 
GGACCCCATCGTGTTCTGCGACGGGTGCGACCTCATGGTGCACGCCTCCTGCTACGGCAACCCGCTCGCCTCGTTCATCC
CCGACGGCGACTGGTTCTGCTCCGTCTGCACCGCCGCCGCCGCCAAGAAGAGCAAGGGCAACAAGCCGCCGCCGCCGCCG
CCACGCTGCTGCCTCTGCCCGGCGAGGGGCGGCGCGATGAAGCGCACGACGGACGCGCGGTGGGCGCACATCGCGTGCGC
GCTGCTGGTGCCGGAGGTGTTCTTCCGCGACCCCGACGGCCGCGACGGCGTCGACTGCTCCCGCGTCCCCGCGCACCGCT
TCGCCACGGCGTGCTACGTCTGCGAGAGCGGCGGCGGCTGCGCGCTCGAGTGCTCGCAGCCCAGGTGCGGCCTAGGGTTC
CACGTCTCCTGCGGCCTCGACGCCGGCCTCTGCATCGAGTACCAGGAGGCCAAGGCCGGCGGCGGCGGCGGCGGCGTCGT
CGCCGGCTTCTGCTTGGAGCACACCAAGCTCTGGGAAAAGCAACAATTGACAGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23166.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis