Browse Element(s) Details


OsAffx.23180.1.S1_at

Description tigr:9629.m00957
TID=OsAffx.23180.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1007011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10040Os.43600.1.S1_at11/111+5233425..5241321Cytochrome P450 90D2, putative, expressed
LOC_Os01g10050Os.45942.1.S1_at11/111+5242607..5247918DEAD/DEAH box helicase family protein, expressed
LOC_Os01g10060OsAffx.10990.1.S1_s_at11/111+5248690..5249926hypothetical protein
LOC_Os01g10070OsAffx.23180.1.S1_x_at11/111+5253316..5254128expressed protein
LOC_Os01g10070OsAffx.23180.1.S1_at11/111+5253316..5254128expressed protein
LOC_Os01g10080Os.2196.1.S1_a_at11/111+5255058..5257819expressed protein
LOC_Os01g10090OsAffx.13428.1.S1_s_at11/111+5257991..5259700pentatricopeptide, putative
LOC_Os01g10100Os.7918.1.S1_s_at11/111+5260224..5262904expressed protein
LOC_Os01g10110Os.43596.1.S1_at11/111+5267274..5272324Cytokinin dehydrogenase 1 precursor, putative, expressed
LOC_Os01g10120Os.47130.4.A1_x_at4/111+5277984..5278307retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23180.1.S1_at--758--3371Chr01:5253819..5254035 (25 bp)
CACCATCCATCAGACTTTCAAGATA
LOC_Os01g10070
OsAffx.23180.1.S1_at--817--1731Chr01:5253820..5254036 (25 bp)
ACCATCCATCAGACTTTCAAGATAG
LOC_Os01g10070
OsAffx.23180.1.S1_at--937--3531Chr01:5253822..5254038 (25 bp)
CATCCATCAGACTTTCAAGATAGAA
LOC_Os01g10070
OsAffx.23180.1.S1_at--1032--9231Chr01:5254020..5254040 (21 bp)
TCCATCAGACTTTCAAGATAGAATC
LOC_Os01g10070
OsAffx.23180.1.S1_at--810--5691Chr01:5254023..5254047 (25 bp)
GACTTTCAAGATAGAATCAGACTTA
LOC_Os01g10070
OsAffx.23180.1.S1_at--671--1231Chr01:5254031..5254055 (25 bp)
AGATAGAATCAGACTTAGGTTTTGA
LOC_Os01g10070
OsAffx.23180.1.S1_at--659--9651Chr01:5254039..5254063 (25 bp)
TCAGACTTAGGTTTTGATATTATGG
LOC_Os01g10070
OsAffx.23180.1.S1_at--1081--691Chr01:5254069..5254093 (25 bp)
ATGATGTTGGTTGGTACATTTTCAC
LOC_Os01g10070
OsAffx.23180.1.S1_at--14--6291Chr01:5254071..5254095 (25 bp)
GATGTTGGTTGGTACATTTTCACTA
LOC_Os01g10070
OsAffx.23180.1.S1_at--641--8651Chr01:5254073..5254097 (25 bp)
TGTTGGTTGGTACATTTTCACTAGT
LOC_Os01g10070
OsAffx.23180.1.S1_at--510--6611Chr01:5254074..5254098 (25 bp)
GTTGGTTGGTACATTTTCACTAGTG
LOC_Os01g10070
Target Sequence 
CACCATCCATCAGACTTTCAAGATAGAATCAGACTTAGGTTTTGATATTATGGATTTAATGATGTTGGTTGGTACATTTT
CACTAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23180.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis