Browse Element(s) Details


OsAffx.23182.1.S1_at

Description tigr:9629.m00969
TID=OsAffx.23182.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1019011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10150Os.2203.3.S1_x_at11/111+5325721..5332320protein kinase family protein, putative, expressed
LOC_Os01g10160OsAffx.23181.1.S1_x_at11/111+5333506..5334132hypothetical protein
LOC_Os01g10170Os.12008.3.S1_at11/111+5336246..5336531hypothetical protein
LOC_Os01g10180Os.30696.1.S1_at10/111+5349307..5350409expressed protein
LOC_Os01g10190OsAffx.23182.1.S1_at11/111+5351403..5354507hypothetical protein
LOC_Os01g10200OsAffx.23183.1.S1_at11/111+5366204..5366693hypothetical protein
LOC_Os01g10210Os.20203.1.S1_s_at11/111+5370432..5371594expressed protein
LOC_Os01g10210Os.20203.1.S1_at11/111+5370432..5371594expressed protein
LOC_Os01g10219NANA1+5373117..5373358NA

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23182.1.S1_at--936--11Chr01:5353787..5353811 (25 bp)
ATTGAAAGGAAGAGCCAGAGGACGA
LOC_Os01g10190
OsAffx.23182.1.S1_at--757--2771Chr01:5353796..5353820 (25 bp)
AAGAGCCAGAGGACGAATGGGAAAT
LOC_Os01g10190
OsAffx.23182.1.S1_at--295--4111Chr01:5353809..5353833 (25 bp)
CGAATGGGAAATGTGTCAAGGAAAC
LOC_Os01g10190
OsAffx.23182.1.S1_at--526--771Chr01:5353819..5353843 (25 bp)
ATGTGTCAAGGAAACGGAAGCAATT
LOC_Os01g10190
OsAffx.23182.1.S1_at--1100--2871Chr01:5353826..5353850 (25 bp)
AAGGAAACGGAAGCAATTAGGTCTG
LOC_Os01g10190
OsAffx.23182.1.S1_at--886--151Chr01:5353841..5353887 (25 bp)
ATTAGGTCTGAATTATTGGTTGGAG
LOC_Os01g10190
OsAffx.23182.1.S1_at--599--3071Chr01:5353910..5353934 (25 bp)
AATAAAGAAAGGTTTGCTGGTCGCA
LOC_Os01g10190
OsAffx.23182.1.S1_at--129--1411Chr01:5353915..5353939 (25 bp)
AGAAAGGTTTGCTGGTCGCAAGCAG
LOC_Os01g10190
OsAffx.23182.1.S1_at--62--7611Chr01:5354426..5354450 (25 bp)
GGGCACCATTGGTGATGCTCTAAAT
LOC_Os01g10190
OsAffx.23182.1.S1_at--751--7391Chr01:5354437..5354461 (25 bp)
GTGATGCTCTAAATGAATGTCCCTC
LOC_Os01g10190
OsAffx.23182.1.S1_at--986--2271Chr01:5354447..5354471 (25 bp)
AAATGAATGTCCCTCATGTACCTTT
LOC_Os01g10190
Target Sequence 
ATTGAAAGGAAGAGCCAGAGGACGAATGGGAAATGTGTCAAGGAAACGGAAGCAATTAGGTCTGAATTATTGGTTGGAGA
AAATGGAATTAATGACAAACAAATAAAGAAAGGTTTGCTGGTCGCAAGCAGGGTGGATGGAGAATGGAGTAGGGGCACCA
TTGGTGATGCTCTAAATGAATGTCCCTCATGTACCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23182.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis