Browse Element(s) Details


OsAffx.23190.1.S1_at

Description gb:NM_188323.1
DB_XREF= gi:34903729
TID=OsAffx.23190.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g106601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10600Os.45980.1.S1_s_at10/111+5660125..5665705Aquaporin NIP1.2, putative, expressed
LOC_Os01g10600Os.45980.1.S1_at8/111+5660125..5665705Aquaporin NIP1.2, putative, expressed
LOC_Os01g10600OsAffx.23187.1.S1_at5/111+5660125..5665705Aquaporin NIP1.2, putative, expressed
LOC_Os01g10600OsAffx.9949.1.S1_at4/111+5660125..5665705Aquaporin NIP1.2, putative, expressed
LOC_Os01g10600Os.1288.1.S1_at4/111+5660125..5665705Aquaporin NIP1.2, putative, expressed
LOC_Os01g10610Os.1302.1.S1_at11/111+5665791..5668272BES1/BZR1 homolog protein 4, putative, expressed
LOC_Os01g10630Os.54635.1.S1_at11/111+5672471..5676353H+-ATPase FO-part b-subunit, putative, expressed
LOC_Os01g10630Os.5956.1.S1_at11/111+5672471..5676353H+-ATPase FO-part b-subunit, putative, expressed
LOC_Os01g10640Os.1305.1.S1_at11/111+5682396..5683203expressed protein
LOC_Os01g10650OsAffx.1979.1.S1_x_at11/111+5686691..5687149hypothetical protein
LOC_Os01g10660OsAffx.23190.2.S1_at11/111+5690466..5690792hypothetical protein
LOC_Os01g10660OsAffx.23190.1.S1_at1/111+5690466..5690792hypothetical protein
LOC_Os01g10670OsAffx.23190.3.S1_x_at11/111+5692075..5692386hypothetical protein
LOC_Os01g10670OsAffx.23190.3.S1_s_at11/111+5692075..5692386hypothetical protein
LOC_Os01g10680Os.33166.1.S1_at11/111+5696454..5704560expressed protein
LOC_Os01g10690Os.24974.1.S1_a_at11/111+5715703..5720986expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23190.1.S1_at--911--3931Chr01:5691939..5692178 (25 bp)
CGGCGGTGCCGCAATGTTTAAATGC
NONE
OsAffx.23190.1.S1_at--435--7791Chr01:5691935..5692174 (25 bp)
GGTGCCGCAATGTTTAAATGCTTTA
NONE
OsAffx.23190.1.S1_at--890--2271Chr01:5691920..5691944 (25 bp)
AAATGCTTTAACTACTCCGTGCTCG
NONE
OsAffx.23190.1.S1_at--670--9151Chr01:5691838..5691862 (25 bp)
TGCGACGGCAACTTGGCGCGTCGTT
NONE
OsAffx.23190.1.S1_at--37--3271Chr01:5691830..5691854 (25 bp)
CAACTTGGCGCGTCGTTGCCGTGGT
NONE
OsAffx.23190.1.S1_at--905--8491Chr01:5691809..5691833 (25 bp)
TGGTCCGTGTGATCGGTGGGCCCCG
NONE
OsAffx.23190.1.S1_at--696--4551Chr01:5691794..5691818 (25 bp)
GTGGGCCCCGGTCACCGAGGAGTGG
NONE
OsAffx.23190.1.S1_at--816--8471Chr01:5690811..5690831 (21 bp)
TGGCGATGCGCCACTAGAGCTGGCC
NONE
OsAffx.23190.1.S1_at--544--2031Chr01:5690799..5690823 (25 bp)
ACTAGAGCTGGCCTACACAAGGCTG
NONE
OsAffx.23190.1.S1_at--348--4291Chr01:5690788..5690812 (25 bp)
CCTACACAAGGCTGCTAGCGATGGA
NONE
OsAffx.23190.1.S1_at--223--6211Chr01:5690649..5690739 (25 bp)
GAGGCCACCAAAGGCTACCGACGAT
LOC_Os01g10660
Target Sequence 
CGGCGGTGCCGCAATGTTTAAATGCTTTAACTACTCCGTGCTCGCCGTCGCCGTCGCCGCCGCCGTCGTTGAGCTACACC
GCCGCCGCCACCGCGCGCGCGTGCGACGGCAACTTGGCGCGTCGTTGCCGTGGTCCGTGTGATCGGTGGGCCCCGGTCAC
CGAGGAGTGGGCCCAGGGGCGGCGCACGCGGGCGGGGTGGCGATGCGCCACTAGAGCTGGCCTACACAAGGCTGCTAGCG
ATGGAGGAGCTGAGGCGCATGGTGTCCGCTTCCATCTCCGCCTCTACCGTTGTGAGGCCACCAAAGGCTACCGACGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23190.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis