Browse Element(s) Details


OsAffx.23202.1.S1_x_at

Description tigr:9629.m01113
TID=OsAffx.23202.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Bromodomain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1158011/11DNA-binding bromodomain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11550Os.2066.1.S1_a_at11/111+6218442..6221131TCP family transcription factor containing protein, expressed
LOC_Os01g11550Os.2066.2.S1_x_at11/111+6218442..6221131TCP family transcription factor containing protein, expressed
LOC_Os01g11570Os.7905.1.S1_at11/111+6239311..6241681GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11570OsAffx.26077.1.S1_at5/111+6239311..6241681GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11580Os.37125.2.S1_x_at11/111+6244899..6250200DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os01g11580OsAffx.23202.1.S1_x_at11/111+6244899..6250200DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os01g11590Os.18774.1.S1_s_at11/111+6250523..62540003-oxoacyl-synthase, putative, expressed
LOC_Os01g11590Os.43493.1.S1_at2/111+6250523..62540003-oxoacyl-synthase, putative, expressed
LOC_Os01g11600NANA1+6254717..6255066hypothetical protein
LOC_Os01g11609NANA1+6258125..6258316NA
LOC_Os01g11620Os.43491.1.S1_x_at11/111+6264242..6267574GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11629NANA1+6272410..6272696NA
LOC_Os01g11640OsAffx.11011.1.S1_at11/111+6274280..6274516hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23202.1.S1_x_at--604--10531Chr01:6245711..6245814 (25 bp)
TTCAGGCTCTTCGTCTAGTGATACA
LOC_Os01g11580
OsAffx.23202.1.S1_x_at--755--1311Chr01:6245881..6245905 (25 bp)
AGATGGCTCTGATGCTGCACAGTCA
LOC_Os01g11580
OsAffx.23202.1.S1_x_at--666--5571Chr01:6249713..6249737 (25 bp)
GAAAGTTCACCGACAATTCTGGCAT
LOC_Os01g11580
OsAffx.23202.1.S1_x_at--620--2651Chr01:6249799..6249823 (25 bp)
AACCAATGCTTTTGTGTCCATCTCG
LOC_Os01g11580
OsAffx.23202.1.S1_x_at--411--8711Chr01:6249813..6249837 (25 bp)
TGTCCATCTCGCTGTCTGTTTTAGA
LOC_Os01g11580
OsAffx.23202.1.S1_x_at--696--4951Chr01:6249866..6249890 (25 bp)
GCATTTCATGCGTCTGTACCATTGT
LOC_Os01g11580
OsAffx.23202.1.S1_x_at--1129--9991Chr01:6249911..6249935 (25 bp)
TAGAGTGCTGCGTTTACCCTAATCA
LOC_Os01g11580
OsAffx.23202.1.S1_x_at--365--8411Chr01:6250026..6250050 (25 bp)
GGCCCCACCCTATTGTAATATTGTA
LOC_Os01g11580
OsAffx.23202.1.S1_x_at--4--9671Chr01:6250076..6250100 (25 bp)
TCAGCTGTGTTGGATTACCACGGAT
LOC_Os01g11580
OsAffx.23202.1.S1_x_at--1067--711Chr01:6250104..6250128 (25 bp)
ATGATCTTGCTCTGCTTGTTGTAAG
LOC_Os01g11580
OsAffx.23202.1.S1_x_at--506--2131Chr01:6250137..6250161 (25 bp)
ACAGTCACGTTTGCTCTGGAACTTT
LOC_Os01g11580
Target Sequence 
TTCAGGCTCTTCGTCTAGTGATACAGACACAGATAGTTCATCAGCAGATGGCTCTGATGCTGCACAGTCACCCAGAACGT
AACATCTATAGGCCAGATCTTGATGTCAAGCTGGAAAGTTCACCGACAATTCTGGCATGATATCGTCAGCGAGATTCAAT
GCTGTCTTGTAAATTTTGGCTATGTAGGAAGTCTAACCAAACCAATGCTTTTGTGTCCATCTCGCTGTCTGTTTTAGACT
CATAGTGGGTGCCATAAAATGCACATGCATTTCATGCGTCTGTACCATTGTTTGCAGTTATGTACTTATTGTAGAGTGCT
GCGTTTACCCTAATCATTGAGCTGGAAATTATCTAACATTGGATAGAAGAAACCTGCACATTGGGGGAAGCAAGACAACC
GGTGAAGACCAGACCAGGAACCTGGAGGCCCCACCCTATTGTAATATTGTAAAATTGCTATAGTAGTTGGGTAATTTCAG
CTGTGTTGGATTACCACGGATAAAATGATCTTGCTCTGCTTGTTGTAAGATTTCTGCACAGTCACGTTTGCTCTGGAACT
TT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23202.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis