Browse Element(s) Details


OsAffx.2321.2.S1_s_at

Description tigr:9629.m05140
TID=OsAffx.2321.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5288011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52810Os.38212.1.S1_at6/111+30707676..30710005expressed protein
LOC_Os01g52810Os.52501.1.S1_x_at5/111+30707676..30710005expressed protein
LOC_Os01g52820OsAffx.21521.1.S1_at10/111+30712833..30713207hypothetical protein
LOC_Os01g52830Os.941.1.S1_at11/111+30713755..30714721secreted protein, putative, expressed
LOC_Os01g52840Os.34131.1.S1_s_at10/111+30716516..30718652hAT family dimerisation domain containing protein
LOC_Os01g52850NANA1+30719608..30720030hypothetical protein
LOC_Os01g52864Os.942.1.S1_at11/111+30725792..30732331integral membrane family protein, putative, expressed
LOC_Os01g52864OsAffx.2320.1.S1_at7/111+30725792..30732331integral membrane family protein, putative, expressed
LOC_Os01g52864Os.53962.1.S1_at1/111+30725792..30732331integral membrane family protein, putative, expressed
LOC_Os01g52880OsAffx.2321.2.S1_s_at11/111+30733907..30735353Leucine Rich Repeat family protein, expressed
LOC_Os01g52890Os.37867.1.S1_at11/111+30739675..30740422expressed protein
LOC_Os01g52900Os.28903.1.S1_at11/111+30740541..30742654aminotransferase, putative, expressed
LOC_Os01g52910NANA1+30748903..30749235hypothetical protein
LOC_Os01g52920Os.15402.1.S1_at11/111+30753777..30758934expressed protein
LOC_Os01g52920Os.15402.2.S1_at1/111+30753777..30758934expressed protein
LOC_Os01g52920Os.15402.4.S1_at1/111+30753777..30758934expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009598biological_processdetection of pathogenic bacteria
GO:0016020cellular_componentmembrane
GO:0031225cellular_componentanchored to membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2321.2.S1_s_at--236--10871Chr01:30734681..30734705 (25 bp)
TTGGCGCTGAGCAGCAATGGCCTGA
LOC_Os01g52880
OsAffx.2321.2.S1_s_at--183--1491Chr01:30734693..30734717 (25 bp)
AGCAATGGCCTGAGTGGTCACTTCC
LOC_Os01g52880
OsAffx.2321.2.S1_s_at--824--9291Chr01:30734736..30734760 (25 bp)
TCCGAAACCTCCAGTGCTTGATCAT
LOC_Os01g52880
OsAffx.2321.2.S1_s_at--213--1131Chr01:30734748..30734772 (25 bp)
AGTGCTTGATCATGGACAACAACCC
LOC_Os01g52880
OsAffx.2321.2.S1_s_at--992--2171Chr01:30734763..30734787 (25 bp)
ACAACAACCCAATGAATGTCCCCTT
LOC_Os01g52880
OsAffx.2321.2.S1_s_at--249--7151Chr01:30734814..30734838 (25 bp)
GTCTTCAAGAACTCCGGCTGGCCGG
LOC_Os01g52880
OsAffx.2321.2.S1_s_at--931--291Chr01:30734858..30734882 (25 bp)
ATACCCGCGGCGTTTGGTCAGCTGG
LOC_Os01g52880
OsAffx.2321.2.S1_s_at--870--10751Chr01:30734888..30734912 (25 bp)
TTGACGACGCTGTCACTCGAAGACA
LOC_Os01g52880
OsAffx.2321.2.S1_s_at--144--8071Chr01:30734924..30734948 (25 bp)
GGAGAAATCCCTCCGGTGCTGACCA
LOC_Os01g52880
OsAffx.2321.2.S1_s_at--281--5851Chr01:30734944..30734968 (25 bp)
GACCAGGCTGACAAGGATGTATCAC
LOC_Os01g52880
OsAffx.2321.2.S1_s_at--1039--6271Chr01:30734959..30734983 (25 bp)
GATGTATCACCTGAACCTGAGCAAC
LOC_Os01g52880
Target Sequence 
TTGGCGCTGAGCAGCAATGGCCTGAGTGGTCACTTCCCTCCTGGACTCTCCGGCCTCCGAAACCTCCAGTGCTTGATCAT
GGACAACAACCCAATGAATGTCCCCTTACCTTCCGAGCTCGGTGGTCTCCCTCGTCTTCAAGAACTCCGGCTGGCCGGCT
CCGGCTACTCGGGACAGATACCCGCGGCGTTTGGTCAGCTGGCGAGCTTGACGACGCTGTCACTCGAAGACAACAACCTC
ACCGGAGAAATCCCTCCGGTGCTGACCAGGCTGACAAGGATGTATCACCTGAACCTGAGCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2321.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis