Browse Element(s) Details


OsAffx.23211.1.S1_at

Description tigr:9629.m01161
TID=OsAffx.23211.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1201011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11952Os.50353.1.S1_at11/111+6504158..6511442PHD finger protein, putative, expressed
LOC_Os01g11960Os.16133.1.S1_at11/111+6514930..6517828PHD-finger family protein, expressed
LOC_Os01g11970NANA1+6520511..6521254hypothetical protein
LOC_Os01g11980Os.43459.1.S1_at9/111+6522334..6524252expressed protein
LOC_Os01g11990Os.30623.1.S1_at11/111+6525599..6528647expressed protein
LOC_Os01g11990Os.51808.1.S1_at8/111+6525599..6528647expressed protein
LOC_Os01g11990Os.53454.1.S1_x_at2/111+6525599..6528647expressed protein
LOC_Os01g12000Os.5066.1.S1_at11/111+6531414..6532631expressed protein
LOC_Os01g12010OsAffx.23211.1.S1_at11/111+6534456..6534698hypothetical protein
LOC_Os01g12020Os.37822.2.S2_at11/111+6537810..6539878Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g12020Os.37822.2.S1_at11/111+6537810..6539878Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g12030Os.37822.1.A2_at4/111+6538773..6541263Glycosyl hydrolase family 9 protein
LOC_Os01g12030Os.32667.2.S1_x_at1/111+6538773..6541263Glycosyl hydrolase family 9 protein
LOC_Os01g12040OsAffx.22940.5.S1_x_at11/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040OsAffx.22940.2.S1_s_at11/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040OsAffx.22940.5.S1_at11/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040OsAffx.22940.1.S1_s_at11/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040Os.35344.3.S1_x_at10/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040Os.35344.18.S1_x_at10/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040OsAffx.22940.2.S1_at8/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040OsAffx.22940.3.S1_x_at8/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040OsAffx.31552.2.S1_at1/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12060Os.14645.1.S1_s_at3/111+6555733..6556179hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23211.1.S1_at--313--7171Chr01:6534616..6534640 (25 bp)
GTCTCCAGCCGGAGGAACACAAGTC
LOC_Os01g12010
OsAffx.23211.1.S1_at--986--4411Chr01:6534609..6534633 (25 bp)
GCCGGAGGAACACAAGTCCCCGAGA
LOC_Os01g12010
OsAffx.23211.1.S1_at--548--2211Chr01:6534598..6534622 (25 bp)
ACAAGTCCCCGAGATCACGCGAGAT
LOC_Os01g12010
OsAffx.23211.1.S1_at--854--4231Chr01:6534590..6534614 (25 bp)
CCGAGATCACGCGAGATCGATCGAT
LOC_Os01g12010
OsAffx.23211.1.S1_at--867--6391Chr01:6534568..6534592 (25 bp)
GATCGGAGACAAAATTACGTGTGCA
LOC_Os01g12010
OsAffx.23211.1.S1_at--1138--3131Chr01:6534556..6534580 (25 bp)
AATTACGTGTGCAGATCGACTACAG
LOC_Os01g12010
OsAffx.23211.1.S1_at--1065--8671Chr01:6534549..6534573 (25 bp)
TGTGCAGATCGACTACAGAGAGCCG
LOC_Os01g12010
OsAffx.23211.1.S1_at--761--9351Chr01:6534541..6534565 (25 bp)
TCGACTACAGAGAGCCGGGAAGACA
LOC_Os01g12010
OsAffx.23211.1.S1_at--603--2751Chr01:6534522..6534546 (25 bp)
AAGACAGGCAGGGCCCGAGATAGAT
LOC_Os01g12010
OsAffx.23211.1.S1_at--790--4231Chr01:6534508..6534532 (25 bp)
CCGAGATAGATAGGGACGCCGCGCC
LOC_Os01g12010
OsAffx.23211.1.S1_at--396--4491Chr01:6534486..6534510 (25 bp)
GCCGGAGCCACGAACAGGGCACATG
LOC_Os01g12010
Target Sequence 
GTCTCCAGCCGGAGGAACACAAGTCCCCGAGATCACGCGAGATCGATCGATCGGAGACAAAATTACGTGTGCAGATCGAC
TACAGAGAGCCGGGAAGACAGGCAGGGCCCGAGATAGATAGGGACGCCGCGCCGGAGCCACGAACAGGGCACATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23211.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis