Browse Element(s) Details


OsAffx.23254.1.S1_at

Description gb:NM_187890.1
DB_XREF= gi:34902863
TID=OsAffx.23254.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1503911/11pectinesterase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15020Os.46044.1.S1_s_at11/111+8417793..8427082WD-40 repeat family protein, putative, expressed
LOC_Os01g15020Os.46044.2.S1_x_at11/111+8417793..8427082WD-40 repeat family protein, putative, expressed
LOC_Os01g15039OsAffx.23254.1.S1_x_at11/111+8444563..8448291pectinesterase family protein, putative, expressed
LOC_Os01g15039OsAffx.23254.1.S1_at11/111+8444563..8448291pectinesterase family protein, putative, expressed
LOC_Os01g15039Os.7348.2.S1_x_at1/111+8444563..8448291pectinesterase family protein, putative, expressed
LOC_Os01g15039Os.54835.1.S1_s_at1/111+8444563..8448291pectinesterase family protein, putative, expressed
LOC_Os01g15060NANA1+8452144..8452824hypothetical protein
LOC_Os01g15070NANA1+8454228..8454488hypothetical protein
LOC_Os01g15080OsAffx.20313.1.S1_x_at6/111+8454761..8455512hypothetical protein
LOC_Os01g15090NANA1+8457874..8458128hypothetical protein
LOC_Os01g15100NANA1+8468176..8468442hypothetical protein
LOC_Os01g15110Os.15140.1.S1_at11/111+8472306..8476307Syntaxin 23, putative, expressed
LOC_Os01g15110OsAffx.26720.1.S1_at1/111+8472306..8476307Syntaxin 23, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23254.1.S1_at--693--3811Chr01:8444883..8444907 (25 bp)
CTCCATGCTTGCATCGTGGAGGCCA
LOC_Os01g15039
OsAffx.23254.1.S1_at--147--10591Chr01:8444823..8444847 (25 bp)
TTCTCCCGGGTGGTCGTCATGGAGT
LOC_Os01g15039
OsAffx.23254.1.S1_at--397--7711Chr01:8444816..8444840 (25 bp)
GGGTGGTCGTCATGGAGTCCTACCT
LOC_Os01g15039
OsAffx.23254.1.S1_at--576--8031Chr01:8444803..8444827 (25 bp)
GGAGTCCTACCTCGGCGCAGGTGTC
LOC_Os01g15039
OsAffx.23254.1.S1_at--570--6971Chr01:8444713..8444737 (25 bp)
GTACCGCAACTATGGGCCTGGCGCC
LOC_Os01g15039
OsAffx.23254.1.S1_at--532--2531Chr01:8444706..8444730 (25 bp)
AACTATGGGCCTGGCGCCAACATCG
LOC_Os01g15039
OsAffx.23254.1.S1_at--368--9131Chr01:8444672..8444696 (25 bp)
TGCGGTGGCCCGGATACCACGTGAT
LOC_Os01g15039
OsAffx.23254.1.S1_at--388--8411Chr01:8444666..8444690 (25 bp)
GGCCCGGATACCACGTGATCATGGA
LOC_Os01g15039
OsAffx.23254.1.S1_at--262--3971Chr01:8444662..8444686 (25 bp)
CGGATACCACGTGATCATGGACGCC
LOC_Os01g15039
OsAffx.23254.1.S1_at--595--9151Chr01:8444627..8444651 (25 bp)
TGCGCTTCACCGTGCGGCGGTTCAT
LOC_Os01g15039
OsAffx.23254.1.S1_at--791--8351Chr01:8444612..8444636 (25 bp)
GGCGGTTCATCGACGGCCTCGCTTG
LOC_Os01g15039
Target Sequence 
CTCCATGCTTGCATCGTGGAGGCCAAGTACCCGACCTACCTCGGACGCCCGTGGAAGCCCTTCTCCCGGGTGGTCGTCAT
GGAGTCCTACCTCGGCGCAGGTGTCCAGCCGCGCGGATGGCTGGAGTGGGACGGCGACGGCGGCGAGCTCGCCACGCTAT
TCTACGGGGAGTACCGCAACTATGGGCCTGGCGCCAACATCGGCGGCCGGGTGCGGTGGCCCGGATACCACGTGATCATG
GACGCCGCCGTCGCTGTGCGCTTCACCGTGCGGCGGTTCATCGACGGCCTCGCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23254.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis