Browse Element(s) Details


OsAffx.23331.3.S1_s_at

Description gb:NM_183777.1
DB_XREF= gi:34894681
GEN=P0426D06.6
TID=OsAffx.23331.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0426D06.6 (P0426D06.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2178011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21730OsAffx.20313.1.S1_x_at4/111+12180719..12181485hypothetical protein
LOC_Os01g21740OsAffx.2052.1.S1_at11/111+12186014..12186478hypothetical protein
LOC_Os01g21750NANA1+12188028..12188369hypothetical protein
LOC_Os01g21760OsAffx.10689.1.S1_at11/111+12192066..12193294hypothetical protein
LOC_Os01g21760OsAffx.31174.4.S1_x_at1/111+12192066..12193294hypothetical protein
LOC_Os01g21770Os.51634.1.S1_at11/111+12196716..12197133expressed protein
LOC_Os01g21780OsAffx.23331.3.S1_s_at11/111+12202829..12206780hypothetical protein
LOC_Os01g21780OsAffx.23331.2.S1_at9/111+12202829..12206780hypothetical protein
LOC_Os01g21780OsAffx.23331.2.S1_x_at8/111+12202829..12206780hypothetical protein
LOC_Os01g21790NANA1+12207604..12208247hypothetical protein
LOC_Os01g21800NANA1+12213643..12214037hypothetical protein
LOC_Os01g21810OsAffx.23331.1.S1_s_at11/111+12215016..12217248hypothetical protein
LOC_Os01g21810Os.10381.1.S1_at1/111+12215016..12217248hypothetical protein
LOC_Os01g21820Os.27425.1.S1_at11/111+12217806..12230606Preprotein translocase secA subunit, chloroplast precursor, putative, expressed
LOC_Os01g21830OsAffx.11151.1.S1_at11/111+12231086..12231889hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23331.3.S1_s_at--481--5271Chr01:12205683..12205707 (25 bp)
GAATGATCCAGAACTAACACGTAAT
LOC_Os01g21780
OsAffx.23331.3.S1_s_at--262--9751Chr01:12205704..12205728 (25 bp)
TAATACCGTTTCTAGTTATCTCCAG
LOC_Os01g21780
OsAffx.23331.3.S1_s_at--514--7972Chr01:12205935..12205959 (25 bp)
GGATCTGCATCTCTTCAACAACAAA
LOC_Os01g21780
OsAffx.23331.3.S1_s_at--1053--3052Chr01:12206000..12206024 (25 bp)
AATAATTCTATCACAAACCCGCTAC
LOC_Os01g21780
OsAffx.23331.3.S1_s_at--816--5631Chr01:12206057..12206081 (25 bp)
GACAGCCAATTATCATGGGCCTAAA
LOC_Os01g21780
OsAffx.23331.3.S1_s_at--860--391Chr01:12206206..12206230 (25 bp)
ATCAGAGCCAACTAACAACACGTCG
LOC_Os01g21780
OsAffx.23331.3.S1_s_at--125--2472Chr01:12206219..12206243 (25 bp)
AACAACACGTCGAGTTTCAGCCACT
LOC_Os01g21780
OsAffx.23331.3.S1_s_at--711--6831Chr01:12206232..12206256 (25 bp)
GTTTCAGCCACTCATGCTATTGCAA
LOC_Os01g21780
OsAffx.23331.3.S1_s_at--185--2731Chr01:12206393..12206416 (24 bp)
AAGCACAAGCCAGCTGGAGAGTAAC
LOC_Os01g21780
OsAffx.23331.3.S1_s_at--158--3012Chr01:12206417..12206441 (25 bp)
AATGACGAAAGATATGCACCCCATA
LOC_Os01g21780
OsAffx.23331.3.S1_s_at--33--2472Chr01:12206468..12206492 (25 bp)
AACAACACCTGATGATTCTTCTAAT
LOC_Os01g21780
Target Sequence 
GAATGATCCAGAACTAACACGTAATACCGTTTCTAGTTATCTCCAGAAATATAAGGCGTATCTTCTTAAACAAGAACAAA
AAGACCAACAATTACCTATTGATGACAATACCAATACTAGTTCAATCAAAAGTCAACAAGGATCTGCATCTCTTCAACAA
CAAATTATGAATTACGGTGAAAATGATAGCATGGACAATCAATCAATAATTCTATCACAAACCCGCTACAATGAACATAG
TAACAAGCAACCAAAGTTGTTGACAGCCAATTATCATGGGCCTAAAAACATGCATCATCATCACAAAAACACCAACATGC
AACCTTCCAATGTACTGCGGCCTCCTAACTTGATCAATGCAAAGGGATTCAATATGTCCTTTAACAAGGAAGAGATCAAC
GAAGCCATATATCAGAGCCAACTAACAACACGTCGAGTTTCAGCCACTCATGCTATTGCAAAAGCACAAGCCAGCTGGAG
AGTAACAATGACGAAAGATATGCACCCCATATCTCAACTACACCAACAAGATGATGAAACAACACCTGATGATTCTTCTA
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23331.3.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis