Browse Element(s) Details


OsAffx.23335.1.S1_x_at

Description tigr:9629.m02135
TID=OsAffx.23335.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY030303 CBL-interacting protein kinase 19
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g104208/11expressed protein
LOC_Os06g351603/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10390OsAffx.25108.4.S1_s_at11/114+5612236..5614112transposon protein, putative, unclassified
LOC_Os04g10390OsAffx.25108.1.S1_x_at5/114+5612236..5614112transposon protein, putative, unclassified
LOC_Os04g10400Os.49531.1.S1_at9/114+5616756..5620495Electron transfer flavoprotein beta-subunit, putative, expressed
LOC_Os04g10410OsAffx.25959.1.S1_at11/114+5624937..5629621Amidase family protein, expressed
LOC_Os04g10420Os.54559.1.S1_at11/114+5635855..5646506expressed protein
LOC_Os04g10420Os.37514.1.S1_at11/114+5635855..5646506expressed protein
LOC_Os04g10420OsAffx.3763.1.S1_s_at11/114+5635855..5646506expressed protein
LOC_Os04g10420OsAffx.23335.1.S1_x_at8/114+5635855..5646506expressed protein
LOC_Os04g10420OsAffx.20160.1.S1_x_at1/114+5635855..5646506expressed protein
LOC_Os04g10420Os.54153.1.S1_at1/114+5635855..5646506expressed protein
LOC_Os04g10434Os.53788.1.S1_at11/114+5649164..5655744Amidase family protein, expressed
LOC_Os04g10434OsAffx.23696.1.S1_x_at1/114+5649164..5655744Amidase family protein, expressed
LOC_Os04g10434OsAffx.988.1.S1_at1/114+5649164..5655744Amidase family protein, expressed
LOC_Os04g10450OsAffx.13751.1.S1_at10/114+5663294..5664870hypothetical protein
LOC_Os04g10450OsAffx.28563.1.S1_x_at1/114+5663294..5664870hypothetical protein
LOC_Os04g10460OsAffx.25959.2.S1_at11/114+5666494..5669400Amidase family protein, expressed
LOC_Os04g10470NANA4+5670693..5671064hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005829cellular_componentcytosol
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23335.1.S1_x_at--1000--1851Chr04:5643319..5643343 (25 bp)
ACGACTGTGTCCAGTGTCCGCGCAT
LOC_Os04g10420
OsAffx.23335.1.S1_x_at--137--592Chr04:5643296..5643320 (25 bp)
ATGCCGCGGCCCAAGATCCTAAACG
LOC_Os04g10420
OsAffx.23335.1.S1_x_at--906--412Chr04:5643263..5643287 (25 bp)
ATCATTGCATCGTCGCCGAGCTTCG
LOC_Os04g10420
OsAffx.23335.1.S1_x_at--583--5672Chr04:5643173..5643197 (25 bp)
GACATCATCGCCAAGCTAGAGGAGA
LOC_Os04g10420
OsAffx.23335.1.S1_x_at--844--4372Chr04:5643163..5643187 (25 bp)
CCAAGCTAGAGGAGATCGCCGGCAT
LOC_Os04g10420
OsAffx.23335.1.S1_x_at--784--8093Chr06:20489891..20489915 (25 bp)
GGACCAAGGACTGCCAGGTGAGCAT
LOC_Os06g35160
OsAffx.23335.1.S1_x_at--483--1993Chr06:20489882..20489906 (25 bp)
ACTGCCAGGTGAGCATCGAGGCGAC
LOC_Os06g35160
OsAffx.23335.1.S1_x_at--1121--453Chr06:20489829..20489853 (25 bp)
ATCTCCGCCAAGGTGTTCGAGCTCA
LOC_Os06g35160
OsAffx.23335.1.S1_x_at--957--6911Chr01:12495449..12495473 (25 bp)
GTAGGGCGTACACCCGGAGCCACCT
NONE
OsAffx.23335.1.S1_x_at--451--8091Chr01:12495434..12495458 (25 bp)
GGAGCCACCTACGGCGCTCGGATGT
NONE
OsAffx.23335.1.S1_x_at--1116--931Chr01:12495373..12495397 (25 bp)
AGGAATCGATGAGCGGTTGCGGACT
NONE
Target Sequence 
ACGACTGTGTCCAGTGTCCGCGCATGCCGCGGCCCAAGATCCTAAACGNGTTCGACATCATTGCATCGTCGCCGAGCTTC
GACNTGTCCGGGCTGTTCCAGGAGCGNGGCGAGAGGATGCGCTTCGTGTCCGGCGCGTCGGTGGCCGACATCATCGCCAA
GCTAGAGGAGATCGCCGGCATGGTGAGCTTCATGGCGNGGACCAAGGACTGCCAGGTGAGCATCGAGGCGACGCNGAACG
GNCAGAAGNGCGCGCTCGCCATCTCCGCCAAGGTGTTCGAGCTCACNTGNGAGCTCGTCATGGTCCAGNTGTCCATGNNN
CGNNNANGNAGCGGTGCTCGGATGTCCGGCAGGCGCGCGCGCCCTGAACCAGTGGCGGCGCCTGGCTGTCCGGCGGTCAG
AGGCGGTGGGGTAGGGCGTACACCCGGAGCCACCTACGGCGCTCGGATGTCCGGCGGGAGGTGGTGGCTGCGGGCTGGAG
CGCGTGAGGAATCGATGAGCGGTTGCGGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23335.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis