Browse Element(s) Details


OsAffx.23361.1.S1_s_at

Description gb:NM_193318.1
DB_XREF= gi:34913719
GEN=OSJNBa0065J17.15
TID=OsAffx.23361.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0065J17.15 (OSJNBa0065J17.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3627011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36250Os.38395.2.S1_x_at11/111+20397015..20403075transposon protein, putative, Mutator sub-class
LOC_Os01g36250Os.38395.4.S1_x_at9/111+20397015..20403075transposon protein, putative, Mutator sub-class
LOC_Os01g36250Os.38395.3.S1_x_at9/111+20397015..20403075transposon protein, putative, Mutator sub-class
LOC_Os01g36250Os.38395.1.S1_at1/111+20397015..20403075transposon protein, putative, Mutator sub-class
LOC_Os01g36260Os.38395.3.S1_x_at8/111+20420864..20426977Transposable element protein, putative, MuDR
LOC_Os01g36260Os.38395.4.S1_x_at8/111+20420864..20426977Transposable element protein, putative, MuDR
LOC_Os01g36260Os.38395.2.S1_x_at6/111+20420864..20426977Transposable element protein, putative, MuDR
LOC_Os01g36260Os.38395.1.S1_at1/111+20420864..20426977Transposable element protein, putative, MuDR
LOC_Os01g36270OsAffx.23361.1.S1_s_at11/111+20427488..20429131hypothetical protein
LOC_Os01g36280Os.45976.1.S1_at3/111+20436488..20445117transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g36280Os.46306.1.S1_x_at2/111+20436488..20445117transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g36280Os.45976.1.S1_x_at1/111+20436488..20445117transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g36294Os.38346.1.S1_x_at11/111+20451069..20453695Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23361.1.S1_s_at--75--6451Chr01:20427856..20427880 (25 bp)
GATCACGTGAACAGACGGTGGCCCT
LOC_Os01g36270
OsAffx.23361.1.S1_s_at--496--7711Chr01:20427872..20427896 (25 bp)
GGTGGCCCTGATTAATCCGACGTAT
LOC_Os01g36270
OsAffx.23361.1.S1_s_at--43--551Chr01:20427886..20427910 (25 bp)
ATCCGACGTATTTCTATTTCGCCGA
LOC_Os01g36270
OsAffx.23361.1.S1_s_at--1035--10631Chr01:20427903..20427927 (25 bp)
TTCGCCGACACCCACGGAGAAAGGA
LOC_Os01g36270
OsAffx.23361.1.S1_s_at--764--2911Chr01:20427923..20427947 (25 bp)
AAGGATCGATTACAACACACAGCAA
LOC_Os01g36270
OsAffx.23361.1.S1_s_at--249--8351Chr01:20427971..20427995 (25 bp)
GGCTGGTGCTCTTCGGCGACACCAT
LOC_Os01g36270
OsAffx.23361.1.S1_s_at--1075--5331Chr01:20429002..20429026 (25 bp)
GAAGATGACCCTTCAAAACTACCGG
LOC_Os01g36270
OsAffx.23361.1.S1_s_at--436--2411Chr01:20429016..20429040 (25 bp)
AAAACTACCGGAATGTCCCTGCTGG
LOC_Os01g36270
OsAffx.23361.1.S1_s_at--664--8711Chr01:20429029..20429053 (25 bp)
TGTCCCTGCTGGCACTAATGCACAG
LOC_Os01g36270
OsAffx.23361.1.S1_s_at--270--3011Chr01:20429045..20429069 (25 bp)
AATGCACAGGCATGTCTGGCAGTTG
LOC_Os01g36270
OsAffx.23361.1.S1_s_at--879--5451Chr01:20429075..20429099 (25 bp)
GAACTGAACTATCCGGTCATAGACA
LOC_Os01g36270
Target Sequence 
GATCACGTGAACAGACGGTGGCCCTGATTAATCCGACGTATTTCTATTTCGCCGACACCCACGGAGAAAGGATCGATTAC
AACACACAGCAAAAGGGAATAAGAGATGAGGCCGCGGCTGGTGCTCTTCGGCGACACCATCACCGAGCTCTCCTTCGCCG
CCGGCGGCTGGGGCGCCGCCCTCGCCGACCACTTCGCCCGCAAGGGAGATATATGGAGAAGATGACCCTTCAAAACTACC
GGAATGTCCCTGCTGGCACTAATGCACAGGCATGTCTGGCAGTTGCTAAAGAACTGAACTATCCGGTCATAGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23361.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis