Browse Element(s) Details


OsAffx.23373.1.S1_at

Description tigr:9629.m02385
TID=OsAffx.23373.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2467011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24600Os.8360.1.S1_at6/111+13841744..13843096Papain family cysteine protease containing protein, expressed
LOC_Os01g24610NANA1+13844134..13845201transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24620NANA1+13847098..13850334transposon protein, putative, unclassified
LOC_Os01g24630NANA1+13850973..13857128transposon protein, putative, unclassified
LOC_Os01g24640Os.10827.1.S1_x_at6/111+13858327..13859784transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24640Os.46055.2.S1_x_at4/111+13858327..13859784transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24650NANA1+13860078..13860709hypothetical protein
LOC_Os01g24660OsAffx.25936.7.S1_s_at10/111+13862725..13865760transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24660OsAffx.25936.1.S1_s_at10/111+13862725..13865760transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24660OsAffx.25936.1.S1_at1/111+13862725..13865760transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24660OsAffx.25936.5.S1_x_at1/111+13862725..13865760transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24660OsAffx.25936.2.S1_x_at1/111+13862725..13865760transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24670OsAffx.23373.1.S1_at11/111+13868009..13868224hypothetical protein
LOC_Os01g24680Os.5612.1.S1_at11/111+13869753..13875762Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a, putative, expressed
LOC_Os01g24690Os.11335.4.S1_at11/111+13878772..1388073460S ribosomal protein L23A, putative, expressed
LOC_Os01g24700Os.6832.1.S1_at11/111+13882004..13883210expressed protein
LOC_Os01g24710Os.4671.1.S1_a_at11/111+13885637..13887196Salt stress-induced protein, putative, expressed
LOC_Os01g24710Os.57456.1.S1_x_at11/111+13885637..13887196Salt stress-induced protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23373.1.S1_at--6--4111Chr01:13868165..13868189 (25 bp)
CGACTGCGGAGCAAGTGCTCAGGCT
LOC_Os01g24670
OsAffx.23373.1.S1_at--746--3831Chr01:13868162..13868186 (25 bp)
CTGCGGAGCAAGTGCTCAGGCTCAT
LOC_Os01g24670
OsAffx.23373.1.S1_at--265--1491Chr01:13868156..13868180 (25 bp)
AGCAAGTGCTCAGGCTCATGGGCAG
LOC_Os01g24670
OsAffx.23373.1.S1_at--1--2871Chr01:13868153..13868177 (25 bp)
AAGTGCTCAGGCTCATGGGCAGCGT
LOC_Os01g24670
OsAffx.23373.1.S1_at--29--9631Chr01:13868141..13868165 (25 bp)
TCATGGGCAGCGTGGTCGTCGGCGA
LOC_Os01g24670
OsAffx.23373.1.S1_at--831--5611Chr01:13868118..13868142 (25 bp)
GACACGGACGCATATCCGCGGTGGC
LOC_Os01g24670
OsAffx.23373.1.S1_at--28--3351Chr01:13868116..13868140 (25 bp)
CACGGACGCATATCCGCGGTGGCGC
LOC_Os01g24670
OsAffx.23373.1.S1_at--761--3571Chr01:13868108..13868132 (25 bp)
CATATCCGCGGTGGCGCGAGAGCTC
LOC_Os01g24670
OsAffx.23373.1.S1_at--161--4611Chr01:13868093..13868117 (25 bp)
GCGAGAGCTCGTCCGGGCCGTGGAC
LOC_Os01g24670
OsAffx.23373.1.S1_at--996--9371Chr01:13868059..13868083 (25 bp)
TCGAGCACCCAAACCGTTGGCATGC
LOC_Os01g24670
OsAffx.23373.1.S1_at--552--2371Chr01:13868049..13868073 (25 bp)
AAACCGTTGGCATGCCTCTCCTCCG
LOC_Os01g24670
Target Sequence 
CGACTGCGGAGCAAGTGCTCAGGCTCATGGGCAGCGTGGTCGTCGGCGACACGGACGCATATCCGCGGTGGCGCGAGAGC
TCGTCCGGGCCGTGGACCTCGACCCCTCGAGCACCCAAACCGTTGGCATGCCTCTCCTCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23373.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis