Browse Element(s) Details


OsAffx.23381.1.S1_at

Description tigr:9629.m02424
TID=OsAffx.23381.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2502010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25000OsAffx.23380.1.S1_at11/111+14080143..14081268hypothetical protein
LOC_Os01g25010Os.53353.1.S1_at10/111+14084475..14090564oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g25020OsAffx.23381.1.S1_at10/111+14096054..14096774hypothetical protein
LOC_Os01g25030OsAffx.23382.1.S1_at11/111+14099479..14100370dirigent, putative
LOC_Os01g25040OsAffx.8372.1.S1_at3/111+14104596..14109994transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25040OsAffx.8371.1.S1_at1/111+14104596..14109994transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25040OsAffx.3354.1.S1_at1/111+14104596..14109994transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25050OsAffx.23383.1.S1_x_at11/111+14110888..14111717hypothetical protein
LOC_Os01g25060OsAffx.484.1.S1_x_at6/111+14113323..14116969transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25060OsAffx.484.1.S1_at5/111+14113323..14116969transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25060Os.43636.1.S1_at1/111+14113323..14116969transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25060OsAffx.27704.1.S1_at1/111+14113323..14116969transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23381.1.S1_at--677--1631Chr01:14096165..14096189 (25 bp)
AGCGTCACGGTGGAAGTTGTCGCAC
LOC_Os01g25020
OsAffx.23381.1.S1_at--185--3351Chr01:14096170..14096194 (25 bp)
CACGGTGGAAGTTGTCGCACTCGAG
LOC_Os01g25020
OsAffx.23381.1.S1_at--930--4691Chr01:14096246..14096270 (25 bp)
GCGGCTGCGTCCACAAAGGCGATGC
LOC_Os01g25020
OsAffx.23381.1.S1_at--60--9151Chr01:14096251..14096275 (25 bp)
TGCGTCCACAAAGGCGATGCACGAG
LOC_Os01g25020
OsAffx.23381.1.S1_at--1114--831Chr01:14096276..14096300 (25 bp)
ATGGAGCTGCAACGGAGGGCCGCGA
LOC_Os01g25020
OsAffx.23381.1.S1_at--581--8591Chr01:14096369..14096393 (25 bp)
TGGTCCGGTCAGCTGTATGTACATG
LOC_Os01g25020
OsAffx.23381.1.S1_at--60--9291NONE
TCCGGTCAGCTTAGTTGTAGGTGAT
NONE
OsAffx.23381.1.S1_at--579--10051Chr01:14096557..14096581 (25 bp)
TAGTTGTAGGTGATGAAGATGCCGT
LOC_Os01g25020
OsAffx.23381.1.S1_at--1058--2791Chr01:14096572..14096596 (25 bp)
AAGATGCCGTCGTTGAAGCACTCGC
LOC_Os01g25020
OsAffx.23381.1.S1_at--55--9191Chr01:14096576..14096600 (25 bp)
TGCCGTCGTTGAAGCACTCGCGCGG
LOC_Os01g25020
OsAffx.23381.1.S1_at--689--7031Chr01:14096699..14096723 (25 bp)
GTACAAGTGCTCCTTGTCACCCCAG
LOC_Os01g25020
Target Sequence 
AGCGTCACGGTGGAAGTTGTCGCACTCGAGGCGGAGGTCGTCGTGGCGGGAGCGAAGGGCGGCGAAGTGGCGAGGGTGTC
GGCGGCTGCGTCCACAAAGGCGATGCACGAGATGGAGCTGCAACGGAGGGCCGCGAGCGCTGCTCACCCCTTTCCCCTTT
CCTTTTCTTCCAACTCCCTCCCCTTTCCTGAAGTGCAGCGACGGTGGTCCGGTCAGCTGTATGTACATGAGGCAGGCGGA
GAAGGCGGCAGCGTCGGCGGTGGTCCGGTCAGCTTAGTTGTAGGTGATGAAGATGCCGTCGTTGAAGCACTCGCGCGGGC
GCAGCCGATCCTAGTGAAGTTGGGCCTAACCATGAAGGCGAAGTGGCCGCACTCGTGGAAGTCAACGCCGGCAGTGCAGT
TGCCGATGTCTCTGTCGTACAAGTGCTCCTTGTCACCCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23381.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis